Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H04
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...    48   8e-07
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841     48   8e-07
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    48   8e-07
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...    30   0.30 
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904...    26   3.7  
10_03_0002 - 6858257-6861205                                           25   8.6  
03_02_0738 - 10824121-10825572                                         25   8.6  

>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +1

Query: 55  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDS 41


>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +1

Query: 55  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDS 41


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = +1

Query: 49  FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
           ++M + P+    IVKKR K+F R  SDRY  LK +WR+P+GID+
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDS 363


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 55  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 147
           MA+ P+    IVKKR K+F R  SDRY  LK
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30


>12_02_0388 -
           18486957-18487016,18487286-18489418,18489985-18490484,
           18490728-18490899
          Length = 954

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 RHQSDRYDKLKRNWRKPRGIDN 180
           R + D  +++K  W K RG+D+
Sbjct: 933 RFEDDELEEIKARWNKDRGLDS 954


>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 64  RPV-YRPTIVKKRTKRFIRHQSDRYD 138
           RPV  R TI+++R  R   H  DR+D
Sbjct: 391 RPVDLRDTIIQRRAARGHHHSPDRHD 416


>03_02_0738 - 10824121-10825572
          Length = 483

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 127 DRYDKLKRNWRKP 165
           DRY++++R WR P
Sbjct: 369 DRYEEMRRQWRHP 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,407,954
Number of Sequences: 37544
Number of extensions: 59954
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)