Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H04
         (181 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for ...    79   3e-15
BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32 p...    79   3e-15
BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32 p...    79   3e-15
AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32 p...    79   3e-15
BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.      51   6e-07
BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.      49   2e-06

>X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for
           ribosomal protein L32. ).
          Length = 135

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = +1

Query: 58  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDN
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDN 43


>BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = +1

Query: 58  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDN
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDN 43


>BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = +1

Query: 58  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDN
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDN 43


>AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = +1

Query: 58  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDN
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDN 43


>BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.
          Length = 33

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +1

Query: 58  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKR 150
           A+R + +P IVKKRTK+FIRHQSDRY K+KR
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIKR 33


>BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.
          Length = 82

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +1

Query: 58  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 147
           A+R + +P IVKKRTK+FIRHQSDRY K+K
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIK 32


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,580,468
Number of Sequences: 237096
Number of extensions: 350965
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)