Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_H04
(181 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 48 7e-07
U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-link... 26 4.1
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 26 4.1
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 26 4.1
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 26 4.1
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 26 4.1
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 26 4.1
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 26 4.1
U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical pr... 25 7.1
U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical pr... 25 7.1
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 48.4 bits (110), Expect = 7e-07
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +1
Query: 85 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
+VKK+ +F RH+SDRY ++ +WRKP+GIDN
Sbjct: 11 VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDN 42
>U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform d protein.
Length = 245
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 107 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 18
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 107 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 18
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 107 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 18
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 107 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 18
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 107 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 18
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 107 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 18
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 107 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 18
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical
protein C14F11.4a protein.
Length = 345
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 73 YRPTIVKKRT--KRFIRHQSDRYDKLKRN 153
Y P + KK +RFI ++R+D + RN
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN 32
>U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical
protein C14F11.4b protein.
Length = 341
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 73 YRPTIVKKRT--KRFIRHQSDRYDKLKRN 153
Y P + KK +RFI ++R+D + RN
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,846,379
Number of Sequences: 27780
Number of extensions: 55078
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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