Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H03
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81032-3|CAB02720.1|  204|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    28   4.9  
AF099001-4|AAC68733.1|  215|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 150 TIEVARQRSFAASHNGMSVCSCRSRHSLCAGSPPG 46
           T  V RQ + AA   G   C C ++ S C   PPG
Sbjct: 73  TGRVRRQYATAAVSGGGGGCQCAAQASGCPAGPPG 107


>Z81032-3|CAB02720.1|  204|Caenorhabditis elegans Hypothetical
           protein C02F4.4 protein.
          Length = 204

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 295 GLLVKMPRNYAKCTRTPNINVARISQNVAFRSSLP 191
           G +  +P+N  K T +  +     + NVAFRSSLP
Sbjct: 166 GQINSIPKNAKKATSSSAVVETEKNVNVAFRSSLP 200


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 150 TIEVARQRSFAASHNGMSVCSCRSRHSLCAGSPPG 46
           T  V RQ + AA   G   C C ++ S C   PPG
Sbjct: 73  TGRVRRQYATAAVSGGGGGCQCAAQASGCPAGPPG 107


>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +1

Query: 97  RHSIMRRGERPLPCHLYCIPE--SLYKIMTPSTP 192
           R+  M  GE P P  + C+P     Y +M PS P
Sbjct: 787 RNHSMSAGETPRPSSIVCLPRITDKYSVMFPSAP 820


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
           102 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 198 HYRR*WRHNLIKRFWN--TIEVARQRSFAASHNGMSVCSCRSRHSLCAGSPPG 46
           +Y   WR  ++       T  ++RQ  +A    G   C+C S+ + C   PPG
Sbjct: 48  YYDDAWRTMMVNEGMKGLTARISRQAGYATG--GSQQCNCGSQAAGCPAGPPG 98


>AF099001-4|AAC68733.1|  215|Caenorhabditis elegans Hypothetical
           protein R160.6 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 156 WNTIEVARQRSFAASHNGMSVCSC 85
           WNTI+V +     A    MS+CSC
Sbjct: 112 WNTIKVGKNGQHRAVQIPMSLCSC 135


>AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.3 protein.
          Length = 252

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 123 FAASHNGMSVCSCRSRHSLCAGSPPGLRFKSYL 25
           FAAS        C S  ++C  SPP L   SYL
Sbjct: 66  FAASKECGVRGECESARAVCVSSPPPLSHHSYL 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,243
Number of Sequences: 27780
Number of extensions: 261316
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)