Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H01
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    30   0.19 
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    29   0.33 
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    26   4.0  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   5.3  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   5.3  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   5.3  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   7.0  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   9.3  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 403 VKKHPLLVDSHTFTVSSSKWCAM 335
           VK + L +DSH F + S  WCA+
Sbjct: 514 VKSYDLCIDSHIFPLYSDTWCAV 536


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
 Frame = +3

Query: 78  KEMESDPGFWLSSKSNMXXXXXXXXXXXXKEILNALG------ESICRPDWRVTADGGKN 239
           K  E+  G W+   SN+            KE++++LG       S    +W +  +    
Sbjct: 50  KYFEASVGIWIEEYSNLAETLDAYSSEEAKEVIDSLGAIVYTFRSFDEAEWSLFKNFIDK 109

Query: 240 ETLAIEDAGIHMCLKKL 290
             L I   G+HM  +KL
Sbjct: 110 LQLEIPVIGLHMSDEKL 126


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 345 GVRWLHRVCPPCYLCPKQRVSSGTCVCPH 259
           GV+W++  C  C  C K   +    +CPH
Sbjct: 92  GVKWMNSSCGNCEYCMKAEET----ICPH 116


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -1

Query: 139 IASNMLDLLLSQNPGSLSISFFKAGRMASLNSETRISASFFEVPLV 2
           +++N L L   +NP    +++FK G   SL+++  +  +F   PL+
Sbjct: 650 LSNNALFLAYDKNP---FLTYFKRGLNVSLSTDDPLQFAFTREPLI 692


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 262 ASSIASVSFLPPSAVTLQSGRHIDSPSAFKISFDDSMDKRAIASNMLDLLLSQNPG 95
           AS  A + +L P +         D+     + +DD + K+A+A   + LLL + PG
Sbjct: 264 ASESAPLQYLAPFSGCAMGEWFRDNGKHGLVVYDD-LSKQAVAYRQMSLLLRRPPG 318


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 105 KTRDHFPSPFSKQVEWLPSIRRHVFQHL 22
           K +DH PSP  K+ + +PS   +   HL
Sbjct: 333 KIQDHVPSPSEKKQDRVPSPSNNKEDHL 360


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 45  ELREAILPALKKEMESDPGFWLSS 116
           EL++ ++P L  + +SD G WL +
Sbjct: 300 ELKQLLVPELASKYQSDIGNWLDA 323


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 348 LDDETVKVWLSTNRGCFFTLKLIDNN 425
           +D ET  VWL    GC  TL     N
Sbjct: 96  VDSETFIVWLQGGPGCAGTLGFFSEN 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,947
Number of Sequences: 5004
Number of extensions: 44691
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)