Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H01
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0855 + 6493239-6494420                                           29   3.1  
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    28   4.1  
09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255...    28   4.1  
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    28   5.4  
08_01_0665 - 5745741-5746881,5747188-5747297                           27   7.1  
05_05_0223 - 23406814-23407477,23407597-23407919                       27   7.1  
11_01_0653 - 5285718-5287094                                           27   9.4  

>06_01_0855 + 6493239-6494420
          Length = 393

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 405 LKLIDNNNETTGNRLRKMIKPHVDMLKQ 488
           LK +  N+   G+ L K++KP++++LKQ
Sbjct: 169 LKALRMNSSLLGSDLEKVVKPNLELLKQ 196


>09_06_0328 +
           22365308-22365415,22365743-22366018,22366166-22366417,
           22366542-22366939,22367028-22368021,22368199-22368409,
           22368515-22368749,22368874-22368996,22369190-22369310,
           22369416-22369625
          Length = 975

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 204 PDWRVTADGGKNETLAIEDAGIHMC---LKKLAALDKDNTEGTLGEAIAHHLDDETVKVW 374
           PD    A G  + T+ I      +C   L+  ++L K  T   +G  IA   DD+TV +W
Sbjct: 135 PDDSTLASGSLDNTVHIWSMANGICTAVLRGHSSLVKGVTWDPIGSFIASQSDDKTVIIW 194

Query: 375 LSTN 386
            +++
Sbjct: 195 RTSD 198


>09_01_0178 -
           2548611-2548670,2549816-2549918,2549993-2550096,
           2550893-2550988,2551418-2551482,2551558-2551591,
           2552469-2552540,2552567-2552644,2553416-2553477,
           2554267-2554530,2555057-2555246,2555432-2555500,
           2555613-2555669,2555746-2555846,2556029-2556146,
           2556225-2556272,2556362-2556487,2556960-2557118,
           2558119-2558216,2558324-2558416,2559741-2559937,
           2560231-2560354,2561121-2561334,2561773-2561830,
           2561955-2562433
          Length = 1022

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 351 LNGVRWLHRVCPPCYLCPKQRVSSGTCVCP 262
           LNGV WL  +C P       RVS   C+CP
Sbjct: 544 LNGVLWLCNLCRP----EAPRVSPRCCLCP 569


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 160 DSMDKRAIASNMLDLLLSQNPGSLSISFFKA 68
           D+MD  A A +++DL+   N G + +SF  A
Sbjct: 475 DTMDTDATADDVIDLINEDNDGDVPMSFTSA 505


>08_01_0665 - 5745741-5746881,5747188-5747297
          Length = 416

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 128 VTSYCSFIHRIVKGNLECTRRVDMSAGLEGHGRRRQE 238
           V+ YCS +  +V+      R  +++AGL G GRR ++
Sbjct: 339 VSDYCSIVEHLVRE----WRVEELAAGLSGEGRRARD 371


>05_05_0223 - 23406814-23407477,23407597-23407919
          Length = 328

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -1

Query: 202 RHIDSPSAFKISFDDSMDKRAIASNMLDLLLSQNPGSLSISFFKAGRMASLNSETRISAS 23
           RH D  +A  +   +  D+ + A  ++    S N G  S+S+  +G  A  NSET   +S
Sbjct: 191 RHGDDAAAMVVDGGEEEDQLSPAQMVISFA-SSNGGDASVSWPCSGDDAQNNSETSHESS 249

Query: 22  FFEVP 8
             E P
Sbjct: 250 PPEAP 254


>11_01_0653 - 5285718-5287094
          Length = 458

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 357 ETVKVWLSTNRGCFFTL-KLIDNNNETTGNRLRKMIKPHVDMLKQ 488
           E ++ W+    G F TL K++  NN      + K+IKP++ + ++
Sbjct: 151 ERLEFWIPFLGGSFETLLKMLRRNNAIVRADVEKVIKPNIALFQE 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,116,189
Number of Sequences: 37544
Number of extensions: 309670
Number of successful extensions: 836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)