Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H01
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    32   0.22 
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    30   0.90 
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    30   0.90 
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    30   0.90 
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    28   3.6  
U00043-2|AAC77512.1|  242|Caenorhabditis elegans Set (trithorax/...    28   3.6  
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    27   6.3  
Z82067-1|CAB63317.1|  794|Caenorhabditis elegans Hypothetical pr...    27   8.4  
L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor pr...    27   8.4  
AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dau...    27   8.4  
AF047651-11|AAO61443.1|  446|Caenorhabditis elegans Abnormal dau...    27   8.4  
AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dau...    27   8.4  

>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 291 AALDKDNTEGTLGEAIAHHLDDETVKVWLSTNRGCFFTLKLIDNNNETTGNRLRKMI-KP 467
           AAL +D     L  A+A  L  + +  W++ NRGC   LK++         +L+  I + 
Sbjct: 687 AALQEDER---LSVALAEGLTSKQLGSWVTCNRGCHVLLKMLQVGGPKVIEKLKASISRK 743

Query: 468 HVDMLKQQSTEGAKLL 515
           H+D     +++GA LL
Sbjct: 744 HLD---GYNSKGANLL 756


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 262 ASSIASVSFLPPSAVTLQSGRHIDSPSAFKISFDDSMDKRAIASNMLDLLLSQNPG 95
           AS  A + FL P +         D+     I FDD + K+A+A   + LLL + PG
Sbjct: 237 ASDAAPLQFLAPYSGCAMGEHFRDNGKHALIIFDD-LSKQAVAYRQMSLLLRRPPG 291


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 262 ASSIASVSFLPPSAVTLQSGRHIDSPSAFKISFDDSMDKRAIASNMLDLLLSQNPG 95
           AS  A + FL P +         D+     I FDD + K+A+A   + LLL + PG
Sbjct: 229 ASDAAPLQFLAPYSGCAMGEHFRDNGKHALIIFDD-LSKQAVAYRQMSLLLRRPPG 283


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 262 ASSIASVSFLPPSAVTLQSGRHIDSPSAFKISFDDSMDKRAIASNMLDLLLSQNPG 95
           AS  A + FL P +         D+     I FDD + K+A+A   + LLL + PG
Sbjct: 264 ASDAAPLQFLAPYSGCAMGEHFRDNGKHALIIFDD-LSKQAVAYRQMSLLLRRPPG 318


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
            protein C39D10.7 protein.
          Length = 1185

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 348  NGVRWLHRVCPPCYL-CPKQRVSSGTCVCP 262
            NG+  L ++C P Y+ C   R  SGTC+ P
Sbjct: 1029 NGLHHL-KMCSPHYIVCDNGRAFSGTCIAP 1057


>U00043-2|AAC77512.1|  242|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 1, isoform
           a protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 151 DKRAIASNMLDLLLSQNPGSLSISFFKAGRMA-SLNSETRISASFFEV 11
           D+ A AS   D+  S+NP SL+     +GRM  S N+ +R   S  +V
Sbjct: 16  DRAAAASPSSDIENSENPSSLASHSSSSGRMTPSKNTRSRKGVSVKDV 63


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
            protein R05D3.1 protein.
          Length = 1053

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = -1

Query: 208  SGRHIDSPSAFKISFDDSMDKRAIASNMLDLL----LSQNPGSLSISFFKAGRMASLNSE 41
            S RH +    F+I+ D     R +  +  DLL    L  +     + F + G +    + 
Sbjct: 851  SERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNI 910

Query: 40   TRISASFFEV 11
            + I+A FFEV
Sbjct: 911  SEIAAEFFEV 920


>Z82067-1|CAB63317.1|  794|Caenorhabditis elegans Hypothetical
           protein W03H9.1 protein.
          Length = 794

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 405 LKLIDNNNETTGNRLRKMIKPHVDMLKQQSTEGAKL 512
           + ++DN +  TG  LRK  K   +++K++  +  +L
Sbjct: 533 INIMDNIDVATGTTLRKQRKEQTELVKKEKVQKTRL 568


>L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor
           protein.
          Length = 744

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 45  ELREAILPALKKEMESDPGFWLSSKSNM 128
           +L E + P+LKK+ ++    W S+ SNM
Sbjct: 193 DLIEMVNPSLKKDSDNSALLWASTPSNM 220


>AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform c protein.
          Length = 592

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 45  ELREAILPALKKEMESDPGFWLSSKSNM 128
           +L E + P+LKK+ ++    W S+ SNM
Sbjct: 41  DLIEMVNPSLKKDSDNSALLWASTPSNM 68


>AF047651-11|AAO61443.1|  446|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform d protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 45  ELREAILPALKKEMESDPGFWLSSKSNM 128
           +L E + P+LKK+ ++    W S+ SNM
Sbjct: 193 DLIEMVNPSLKKDSDNSALLWASTPSNM 220


>AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform a protein.
          Length = 744

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 45  ELREAILPALKKEMESDPGFWLSSKSNM 128
           +L E + P+LKK+ ++    W S+ SNM
Sbjct: 193 DLIEMVNPSLKKDSDNSALLWASTPSNM 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,760,915
Number of Sequences: 27780
Number of extensions: 262197
Number of successful extensions: 669
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)