Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G22
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    29   0.37 
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    27   2.6  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    25   6.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.1  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   8.1  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 542  QVDRSIFVGFEHSFQNIVNKNVVITKK 462
            ++D S+F  F   FQNI+ KN  + KK
Sbjct: 1488 KIDTSLFAKFSSQFQNIIAKNFNMDKK 1514


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 462 FLSDNDIFIHNILETVLKTDKYRSIDLYRLYT 557
           F  DND  +H + ++V  TD + + ++YR+Y+
Sbjct: 17  FEEDNDYGLHGLDDSVGFTDLFDAPNIYRVYS 48


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 99  LSGLFNKSASCNSYSDYYVLF 161
           L  +F  S+S +SYS YYV+F
Sbjct: 372 LRSIFEDSSSHSSYSPYYVVF 392


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 40  KKGQERNLIYSQNF-LTMGDACQACLTRVPHATLIATIMCCLGV-GVFCGTMYRGSALSI 213
           K G+ RNL+ +  F + MG    A LT   H T +  I  CL + G   G     + ++I
Sbjct: 353 KTGRYRNLVIAGFFFMLMGIVSFAVLTSFGHRTPLILISLCLAMTGCSYGMNLTSTLIAI 412

Query: 214 V 216
           +
Sbjct: 413 I 413


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 432 YVSNNHKNGTRNSSANSSPPCSVYFLSCSTC 340
           ++++ HK+ T  +  +  PPC V+    STC
Sbjct: 126 FLTSFHKDVTLENYPSYLPPCEVFLDFTSTC 156


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 99   LSGLFNKSASCNSYSDYYVL 158
            LS +F+ S  CNS S +YVL
Sbjct: 1435 LSKIFSDSEDCNSESIHYVL 1454


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 438 G*YVSNNHKNGTRNSSANSSPPCSVYFLSCSTC 340
           G YVS N+KNG         P  +   +S +TC
Sbjct: 369 GPYVSMNNKNGDLTEYTLRHPETNEQLISMATC 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,723
Number of Sequences: 5004
Number of extensions: 49222
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)