Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G22
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385...    30   1.5  
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211...    29   3.6  
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    29   3.6  
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406...    28   4.7  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    28   4.7  
10_08_0513 + 18460095-18460170,18460362-18460441,18461029-184614...    28   6.2  
01_06_1620 + 38697960-38698131,38698532-38700732                       27   8.2  

>12_01_0486 +
           3854889-3855014,3855897-3856089,3856206-3856310,
           3856541-3856629,3856720-3856872,3857047-3857181,
           3857293-3857459,3858193-3858287,3858495-3858868,
           3859101-3859374,3859464-3859531
          Length = 592

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 145 TIMCCLGVGVFCGTM-YRGSALSI 213
           T+M CLG+G+ CG + Y GS L +
Sbjct: 559 TLMFCLGLGILCGAIGYLGSTLFV 582


>11_05_0058 +
           18719852-18719929,18720032-18720889,18720969-18721118,
           18722248-18722496,18722531-18722575,18722576-18722638
          Length = 480

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 210 YSNVRQGFPLSSNMDRKVANDIHHSKCLYGCFRIHALMFGLLN 338
           Y N++  FP SSN    +   + H K L+   R     FGL N
Sbjct: 144 YRNIQYNFP-SSNFATPMPTSVEHLKLLFCYLRPSPTFFGLSN 185


>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
            4066416-4066933,4067435-4067694,4068089-4068594,
            4068667-4071319
          Length = 2107

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 19   FYYFSECKKGQERNLIYSQNFLTMGDACQACLTRVPHATLIATIMCCLGV 168
            F +  EC+   E +   S  FL+  D      + V HA    TI+CC+G+
Sbjct: 1703 FSWNMECQFNSEED---SSTFLSFWDRLVHLNSTVSHAKTRETILCCMGM 1749


>11_01_0518 +
           4057428-4057538,4059609-4059801,4059921-4060025,
           4060259-4060347,4060424-4060576,4060754-4060888,
           4061241-4061407,4062129-4062223,4062367-4062740,
           4062903-4063176,4063806-4063822
          Length = 570

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 145 TIMCCLGVGVFCGTM 189
           T+M CLG+G+ CGT+
Sbjct: 554 TLMFCLGLGILCGTV 568


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 145 TIMCCLGVGVFCGTM-YRGSAL 207
           T+M CLG+G  CG + Y GS L
Sbjct: 551 TLMFCLGLGTLCGKLFYTGSML 572


>10_08_0513 +
           18460095-18460170,18460362-18460441,18461029-18461491,
           18461914-18462073,18462177-18462451,18462634-18462801,
           18463012-18463064
          Length = 424

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 365 YTFCLVAPVVKQPKHKSMNPKAAIQALTMMNIICNFSIHIRRK 237
           YT C  A +VK  +  S + + A Q L   N+IC +S  + +K
Sbjct: 181 YT-CSRAMIVKPSRFLSPDGRRATQVLMTWNVICTYSQFLAQK 222


>01_06_1620 + 38697960-38698131,38698532-38700732
          Length = 790

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 105 GLFNKSASCNSYSDYYVLFGRGSVLWYYVSWISSFYSNVRQGFPLSSN 248
           G+F+     +  + Y +L+   SV W   +W  + Y+ V +  P +S+
Sbjct: 193 GMFSIQLDPSGATQYILLWNSSSVYWASGNWTGNTYTGVPELSPTNSD 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,849,180
Number of Sequences: 37544
Number of extensions: 280593
Number of successful extensions: 606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)