Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G22
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-3|AAK31486.2| 275|Caenorhabditis elegans Hypothetical pr... 44 6e-05
Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical pr... 31 0.45
U53339-5|AAA96201.1| 342|Caenorhabditis elegans Serpentine rece... 29 2.4
Z81533-14|CAB04331.2| 707|Caenorhabditis elegans Hypothetical p... 28 4.2
L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protei... 28 4.2
L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeo... 28 4.2
AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine r... 28 5.6
Z81097-9|CAB03174.2| 183|Caenorhabditis elegans Hypothetical pr... 27 7.4
AC006630-4|AAK68324.1| 311|Caenorhabditis elegans Hypothetical ... 27 7.4
Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical ... 27 9.7
>U23139-3|AAK31486.2| 275|Caenorhabditis elegans Hypothetical
protein F13H8.4 protein.
Length = 275
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/104 (21%), Positives = 38/104 (36%)
Frame = +1
Query: 250 WIEKLQMIFIIVSAXXXXXXXXXXXXXXXXXXXXRQKVYRAWRARVGGRISCAVFMIITY 429
W++K+Q+ FI+++ R+ +Y+ AR GG+ +C + M+I +
Sbjct: 24 WLDKVQVFFIVIAVLMGLFSLFFLCIGFTATGGTRETMYKDDEARCGGKFACVIAMLIDF 83
Query: 430 ILTFIWXXXXXXXXXXXXXXXXXWKLCSKPTNIDLSTCIDFTQF 561
L W +LC CID F
Sbjct: 84 FLIIAWLFIISIVSWLCIFYYFFDRLCMNLPGYTDGDCIDLHVF 127
>Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical
protein F57G4.1 protein.
Length = 838
Score = 31.5 bits (68), Expect = 0.45
Identities = 27/89 (30%), Positives = 39/89 (43%)
Frame = +3
Query: 252 DRKVANDIHHSKCLYGCFRIHALMFGLLNNRCYKTKSIQSMEG*SWRKNFLCRFYDYYLH 431
DRK +H+ C GC R+H M LL N+ + SI+ + N L +L
Sbjct: 322 DRKPVTLTYHN-CSLGCQRVHDQMEELLENQDFMKLSIEDLSTSLAMNNVLS-----FLS 375
Query: 432 INLYMDPSTRFLSDNDIFIHNILETVLKT 518
I Y + S D I N L+ +L+T
Sbjct: 376 ITFYGESSPLPNDDISISFLNDLKEMLQT 404
>U53339-5|AAA96201.1| 342|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 16 protein.
Length = 342
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 61 LIYSQNFLTMGDACQACLTRVPHATLIATIMCCLGVGVFCGT-MYRGSALSIVMFDKVFH 237
L+ + FL C ++ VP+A + ++I CCL G+ M L+ + + H
Sbjct: 79 LMMIERFLDYQTDCDIHVSMVPYAIVHSSIACCLFCGMLTQVFMVIERLLATIKIESYEH 138
Query: 238 FRLIWIEKLQMIFIIV 285
W + F IV
Sbjct: 139 NTSFWHILAYLFFCIV 154
>Z81533-14|CAB04331.2| 707|Caenorhabditis elegans Hypothetical
protein F36G9.12 protein.
Length = 707
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 22 YYFSECKKGQERNLIYSQNFLTMGDACQAC 111
Y CKK RNL+Y NF GD+ AC
Sbjct: 395 YSVESCKKTWWRNLLYINNF---GDSTHAC 421
>L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protein
protein.
Length = 303
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 506 SFQNIVNKNVVITKKPSRRIHIKVNM*VIIIKTAQEILPPTLAL 375
S Q V V T P RR + + NM V++ + +++PPT L
Sbjct: 119 SSQATVTLQVPSTGSPERRRYSETNMEVLLREQLAQLMPPTSQL 162
>L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeobox
protein 23 protein.
Length = 305
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 506 SFQNIVNKNVVITKKPSRRIHIKVNM*VIIIKTAQEILPPTLAL 375
S Q V V T P RR + + NM V++ + +++PPT L
Sbjct: 121 SSQATVTLQVPSTGSPERRRYSETNMEVLLREQLAQLMPPTSQL 164
>AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine
receptor, class z protein5 protein.
Length = 351
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 550 SLYKSIDRYLSVLSTVSKIL*IKMSLSLRNR 458
SLY +I YL V++T+S L + + +SLR +
Sbjct: 204 SLYMTIYYYLEVIATLSAFLYVPIFISLRKK 234
>Z81097-9|CAB03174.2| 183|Caenorhabditis elegans Hypothetical
protein K07A1.1 protein.
Length = 183
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 133 TLIATIMCCLGVGVFCGTMYRGSALSIVMFDKVFHFRLIWIEKLQMIFII 282
T++A I+ +G F Y G + V F V+ +W+ ++QMI+++
Sbjct: 53 TIMAQILIYGVMGYFFKVGYLGLIVIEVAFLSVYGKEHVWLLRVQMIYLV 102
>AC006630-4|AAK68324.1| 311|Caenorhabditis elegans Hypothetical
protein F14H12.2 protein.
Length = 311
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 138 YSDYYVL--FGR---GSVLWYYVSWISSFYSNVRQGFPLSSNMD 254
Y YYVL FG G V +YVSWI +N ++ + ++ D
Sbjct: 218 YDAYYVLAAFGEFIDGKVCGHYVSWIRKHTTNCKESHNVYNDND 261
>Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical
protein W08D2.3b protein.
Length = 559
Score = 27.1 bits (57), Expect = 9.7
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +1
Query: 55 RNLIYSQNFLTMGDACQACLTRVPHATLIATIMCCLGVGVFCGTMYRGSALSIVMFDKVF 234
R L ++T AC +PHA I ++C + + VF GT+ G +LS V+ + V
Sbjct: 91 RRLSLKYVYITCLILISACFLALPHAAHIILLLCIVFI-VF-GTVL-GISLSAVISNFVV 147
Query: 235 HFRLIWIEKLQMIFII 282
F+ LQ + +I
Sbjct: 148 IFKQQSFLLLQFLHLI 163
>Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical
protein W08D2.3a protein.
Length = 562
Score = 27.1 bits (57), Expect = 9.7
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +1
Query: 55 RNLIYSQNFLTMGDACQACLTRVPHATLIATIMCCLGVGVFCGTMYRGSALSIVMFDKVF 234
R L ++T AC +PHA I ++C + + VF GT+ G +LS V+ + V
Sbjct: 94 RRLSLKYVYITCLILISACFLALPHAAHIILLLCIVFI-VF-GTVL-GISLSAVISNFVV 150
Query: 235 HFRLIWIEKLQMIFII 282
F+ LQ + +I
Sbjct: 151 IFKQQSFLLLQFLHLI 166
>AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical
protein B0212.3 protein.
Length = 672
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 509 HSFQNIVNKNVVITKKPSRRIHIKVN-M*VIIIKTAQEILPPTLALHALYTFCL 351
H F N++ +++T S + +N + I ++ EILPP L + AL TF L
Sbjct: 546 HKFLNLLE--LILTSLESDTLDDLLNDIEGIRVRINDEILPPELVITALQTFLL 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,488,582
Number of Sequences: 27780
Number of extensions: 273778
Number of successful extensions: 672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -