Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G22
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.41 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   0.95 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.1  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   6.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 429 VSNNHKNGTRNSSANSSPP 373
           V+NN  NG  NSSA  S P
Sbjct: 538 VNNNSGNGNTNSSARDSSP 556


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +1

Query: 82  LTMGDACQACLTRVPHATLIATIMCCLGVGVFCG 183
           L  GD+C  C   +  ++    + C  G    CG
Sbjct: 37  LGCGDSCHKCKYGIAMSSACGIVQCAKGPDELCG 70


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 450 PSTRFLSDNDIFIHNILE 503
           P T F +D + F+H++ E
Sbjct: 119 PDTFFANDKNSFLHDVTE 136


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 429 VSNNHKNGTRNSSANSSPP 373
           +S++H +     +ANS PP
Sbjct: 74  ISSDHDDSDEEYAANSQPP 92


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 276 HHSKCLYGCFRIHALMFGLLNNRCYKTKSIQSMEG*SWRKN 398
           +H +C    FRI A     ++NR  + + +   +  S R+N
Sbjct: 17  YHQRCSRDWFRISAGCVSRISNRISRNRVLLRGQCISSRRN 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,859
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)