Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G18
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841    187   5e-48
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...   168   2e-42
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...   161   4e-40
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...   126   7e-30
02_02_0511 + 11072699-11073146,11076148-11076365                       30   1.1  
02_02_0355 + 9312814-9313650                                           30   1.1  
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    27   6.1  
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677...    27   8.1  

>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score =  187 bits (455), Expect = 5e-48
 Identities = 92/134 (68%), Positives = 107/134 (79%)
 Frame = +3

Query: 60  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 239
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 240 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 419
           S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I 
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119

Query: 420 VTNAAARLRSQENE 461
           VTN  ARLRSQE+E
Sbjct: 120 VTNKLARLRSQEDE 133


>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score =  168 bits (408), Expect = 2e-42
 Identities = 81/122 (66%), Positives = 97/122 (79%)
 Frame = +3

Query: 60  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 239
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 240 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 419
           S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I 
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119

Query: 420 VT 425
           ++
Sbjct: 120 IS 121


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score =  161 bits (390), Expect = 4e-40
 Identities = 75/102 (73%), Positives = 87/102 (85%)
 Frame = +3

Query: 156 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 335
           +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 99  SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158

Query: 336 KYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQENE 461
            YCAEIAH VS+KKRK IVERA QL I VTN  ARLRSQE+E
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 200



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 60  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 152
           MA+ P+    IVKKR K+F R  SDRY  LK
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score =  126 bits (305), Expect = 7e-30
 Identities = 59/94 (62%), Positives = 74/94 (78%)
 Frame = +3

Query: 54  FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 233
           ++M + P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIG
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIG 379

Query: 234 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 335
           YGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413


>02_02_0511 + 11072699-11073146,11076148-11076365
          Length = 221

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 475 FYIIYSFSWERRRAAALVTLMLSCWARSTIAFRFFEETPCAISAQYFLF 329
           FY   + ++    AA  V +  SC     + F +F + PC   AQY+ +
Sbjct: 135 FYAFSNATFANPSAAGFVNIDSSCCPGPCMPFPYFNQPPCDNRAQYWFW 183


>02_02_0355 + 9312814-9313650
          Length = 278

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +2

Query: 218 DAQHWLWFK*EDPSHATQRFS*SLGPQRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSR 394
           D+Q WL    +D  HA         P+    GD  D + E  R  R W      EG+ R
Sbjct: 3   DSQQWLHGDGDDVEHAAAMTMTEAAPRDDEPGDRRDVDDENERRQRRW----TAEGFGR 57


>03_01_0438 +
           3399203-3399297,3399389-3399480,3399638-3399750,
           3400345-3400610,3400793-3400864,3401023-3401098,
           3401241-3401339,3401432-3401586,3401679-3401783,
           3401880-3401966,3402459-3402543,3402626-3402734,
           3403468-3403544,3403635-3403715,3404137-3404328,
           3404415-3404528,3404650-3404742,3404864-3404990,
           3405075-3405151,3405455-3405502,3405588-3405657,
           3405737-3405810,3405895-3406005,3406222-3406300,
           3406936-3408320
          Length = 1293

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -3

Query: 472 YIIYSFSWERRRAAALVTLMLSCWARSTIA---FRFFEETPCAISAQYFLFCIIRISSSR 302
           Y +++   ER  A +++TLM++C++   +    F  F +   ++   ++      ISSS 
Sbjct: 176 YYLFNSQLERNIALSIITLMITCFSLVVVGGFLFHKFRKNQQSLEECFWEAWACLISSST 235

Query: 301 TLWTKT-LRKPLG 266
            L  KT + + LG
Sbjct: 236 HLRQKTRIERVLG 248


>06_01_0883 +
           6768998-6769381,6769518-6769616,6769664-6769726,
           6770883-6770931,6771338-6771405,6771463-6771715,
           6772244-6772380,6772708-6772821,6773059-6773258,
           6773367-6773561,6773650-6773812
          Length = 574

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 475 FYIIYSFSWERRRAAALVTLMLSC 404
           FY++YSF + R+  A +V  ML C
Sbjct: 397 FYLLYSFFFVRKVVAHVVPFMLYC 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,740,139
Number of Sequences: 37544
Number of extensions: 289848
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)