Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G17
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 41 9e-05
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 30 0.23
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 29 0.53
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 29 0.53
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.93
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 27 1.6
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 2.2
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.8
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 5.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.0
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 6.6
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 25 8.7
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 8.7
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 8.7
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 41.1 bits (92), Expect = 9e-05
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Frame = +3
Query: 75 ITVVLSALFHDGGTENFKTAFRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIFELDPR 254
+ + + A + TE +++ G FL++ L ++ Y W + VN++LIFE + R
Sbjct: 283 LPLAIEAACYYNATEQSSYLLQIWGGFFLVIFAFVLFDLDCYVWEKTRVNYMLIFEFNQR 342
Query: 255 NHLSEQDLMELAAIFGVVWALSILSFIYSASLSIPPFV--NPLALVIIMLAFLFNPLKV 425
L+ + +E I G V+ + L F P F P + ++ FL P+ V
Sbjct: 343 KSLNWRQHLE---IVGAVFFIFSLFFFLCMRNFFPGFTIYFPALFLGVVGTFLIAPVIV 398
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 29.9 bits (64), Expect = 0.23
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 87 LSALFHDGGTENFKTAFRLYRGPFLLVEF-IFLIGINVYGWRSSGVNHVLIFELDP--RN 257
L+ +H G N + A R ++GP LLV+F + +++ W + LIF+ D R
Sbjct: 182 LAEFYHAGMEYNVRVASRYFKGPELLVDFREYDYSLDI--WSFGVMFAALIFKKDTFFRG 239
Query: 258 HLSEQDLMELAAIFG 302
+ L+++A + G
Sbjct: 240 RDNYDQLVKIAKVLG 254
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 28.7 bits (61), Expect = 0.53
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 381 KPMDSQKAVCSNSHCI*NSIYSGPKRHRISRPVPSNPAQIDDS 253
KP+ S A+ S+SH S S R SRP P+ PA S
Sbjct: 225 KPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSS 267
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 28.7 bits (61), Expect = 0.53
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 123 FKTAFRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIF 239
F+T+ + R L +EFI+ + V+GW + G N +IF
Sbjct: 524 FRTSHTISRKFMLSIEFIYQLATIVFGWFNIG-NFFIIF 561
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.9 bits (59), Expect = 0.93
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 24 WTTFKVGLFSGSFIVLFITVVLSALFHDGGT 116
W T + LF SF+V F+TV L L + G+
Sbjct: 445 WATEAIPLFVTSFLVPFMTVFLKILRDENGS 475
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Frame = +1
Query: 7 GNSRARGPRSKLDCSQ------DRL*CYSSRLCCLPYSTMGEQ 117
G +RA GPR + + D L + R CCL Y+TMGE+
Sbjct: 32 GIARACGPRMQANFEGVLIPYVDVLGKFLYRACCLRYATMGEE 74
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -3
Query: 427 NTLSGLKRKASIIITKANGFTKGGMLKLALYIKLNILR-AQTTPNIAASSIKSCSDR*FR 251
NTL+ ++ N T G + + I+L L ++TT + +SS+K+C++R
Sbjct: 363 NTLTEDEKPLQSTKLPGNSLTVGELYQEPKSIQLPELSVSRTTYSAQSSSVKNCNERIPS 422
Query: 250 GSSSKMRT*LTPDDRQPYTFM 188
+ K + L P+++ ++
Sbjct: 423 AKALKKQKHLVPENKSKLQYV 443
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 327 SIYSGPKRHRISRPVPSNP 271
SIY G +R+ IS+P +NP
Sbjct: 4 SIYEGSRRNTISKPSNNNP 22
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 5.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 117 ENFK--TAFRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIFELDPRN 257
EN K +R+ G FLL F +N GWRS V ++E P+N
Sbjct: 1201 ENVKPIAIYRMNGGEFLLCYSQFAFYVNRDGWRSRPTWFV-VWEGSPQN 1248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 106 SWNKADNTTVMNNTINDPENSPTLNVV 26
SW D T +NN D +PTL +
Sbjct: 287 SWENNDFTKEINNNFPDRSETPTLQTI 313
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 135 FRLYRGPFLLVEFIFLIGINVYGWRS 212
FRL RG FLL F +N GW+S
Sbjct: 1037 FRL-RGEFLLCYSDFAFFVNTNGWKS 1061
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 163 RRNGPLYNLKAVLKFSVPPSW 101
R NGP Y+L A L +PP +
Sbjct: 197 RNNGPSYSLLASLASQLPPPY 217
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 24.6 bits (51), Expect = 8.7
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 48 FSGSFIVLFITVVLSALFHDGGTENFKTAFRLYRGPFLLVEFIFLIGINVYGWRSSG 218
F+ S+ +F +V L GT K L G ++ V +FL IN++G + G
Sbjct: 162 FALSWNYVFSFIVTIPLELTTGTMMIKYWTNLNSGIWVTVFIVFLFFINIFGVKGYG 218
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 157 NGPLYNLKAVLKFSVPPSWNKADNTTVMNNTIN 59
N +YN + K S S N +DN T M +++N
Sbjct: 202 NKNIYNARQERKKSKLSSNNPSDNNTTMKSSLN 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,541
Number of Sequences: 5004
Number of extensions: 50661
Number of successful extensions: 151
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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