Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G17
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1165 + 34630369-34630431,34630771-34630855,34631212-346313... 79 2e-15
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53... 65 4e-11
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 36 0.025
05_03_0246 + 10895627-10895829,10897012-10897078,10898258-108984... 29 2.2
07_01_0105 - 798883-798942,799118-799186,799282-799345,799434-79... 29 2.9
04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337 29 2.9
03_06_0052 - 31295839-31295883,31296312-31296380,31296458-312965... 29 2.9
03_02_0647 + 10154668-10156041 29 2.9
03_05_0045 - 20220955-20221046,20221599-20221641,20221715-202217... 25 6.1
03_06_0061 + 31352703-31353037,31353145-31353274,31353708-313539... 27 6.6
01_06_0736 - 31585840-31586459,31586545-31587070,31588051-315881... 27 6.6
05_07_0276 + 28899378-28899953,28900010-28901242 27 8.8
05_01_0454 + 3610608-3613136 27 8.8
>02_05_1165 +
34630369-34630431,34630771-34630855,34631212-34631332,
34631588-34631831,34631922-34632026,34632110-34632154,
34632243-34632395,34632481-34632762,34632844-34632980,
34633065-34633152
Length = 440
Score = 79.0 bits (186), Expect = 2e-15
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Frame = +3
Query: 42 GLFSGSFIVLFITVVL----SALFHDGGTENFKTAFRLYRGPFLLVEF-IFLIGINVYGW 206
GLF+G+F+ LFI + S +F G + F L+ IFL G N++ W
Sbjct: 50 GLFTGTFVSLFIIYAILAHVSGIFTSTGNSAYMEIVYHVFSMFALISLHIFLYGCNLFMW 109
Query: 207 RSSGVNHVLIFELDPRNHLSEQD--LMELAAIFGVVWALSILSFIYSASLSIPPFVNPLA 380
+++ +NH IF+ L+ +D LM + + VV AL I F+ +A ++ + P A
Sbjct: 110 KNTRINHNFIFDFSSNTALTHRDAFLMSASIMCTVVAALVINLFLKNAGVAYANAL-PGA 168
Query: 381 LVIIMLAFLFNPLKVFRHEARFWFLRICGRILAAPFMPVLYAD 509
L+++ LF P +F R+ F+R+ I+ +PF VL AD
Sbjct: 169 LLLLSTGVLFCPFDIFYRSTRYCFMRVMRNIIFSPFYKVLMAD 211
>01_01_0069 +
536787-537068,537193-537493,537528-537581,538848-539241,
539345-539595,539678-539798,539893-540133,540341-540445,
540571-540615,540738-540890,541132-541410,541705-541841,
541975-542017,542228-542329
Length = 835
Score = 64.9 bits (151), Expect = 4e-11
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Frame = +3
Query: 3 TREQQSPWTTFKVGLFSGSFIVLFITVVLSALFHDGGTEN-----FKTAFRLYRGPFLLV 167
T+ ++S TF +GL +G F+ LF+ + A T+ +T + ++ L+
Sbjct: 415 TQRKESHTVTFFIGLMTGCFVALFLGYCIMAHIAGMYTQRRDSIYMETVYPVFSMFSLMF 474
Query: 168 EFIFLIGINVYGWRSSGVNHVLIFELDPRNHLSEQDLM-----ELAAIFGVVWALSILSF 332
+F+ G N+ WR + +N+ IFE L +D+ +A I GV++A L+
Sbjct: 475 LHLFMYGCNMVAWRKARINYSFIFEFAAGRELKYRDVFLVCTASMAVIVGVMFAHLSLAV 534
Query: 333 IYSASLSIPPFVNPLALVIIMLAFLFNPLKVFRHEARFWFLRICGRILAAPFMPVLYAD 509
+ +IP F L++ L LF P + RF FLRI I+ +P V+ D
Sbjct: 535 RGFHAQAIPGF-----LLLGFLLLLFCPFNMVYRSTRFQFLRILRNIVFSPLYKVVMVD 588
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 35.5 bits (78), Expect = 0.025
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +3
Query: 141 LYRGPFLLVEF-IFLIGINVYGWRSSGVNHVLIFELDPRNHLSEQDLME--LAAIFGVVW 311
LY P LLV I+L G+N++ + S VN+ +F+L + HLS +++ L AI +V
Sbjct: 58 LYYNPLLLVALMIWLWGVNLWVFAQSSVNYARVFDL-AQTHLSHREIWRVLLYAILLIV- 115
Query: 312 ALSILSFIYSAS 347
LS Y +S
Sbjct: 116 LLSPFDMFYLSS 127
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 381 LVIIMLAFLFNPLKVFRHEARFWFLRICGRILAAPFMPVLYAD 509
L I+L L +P +F +RF+FLR RI+ P + + D
Sbjct: 108 LYAILLIVLLSPFDMFYLSSRFYFLRTVWRIM-LPLQAITFPD 149
>05_03_0246 +
10895627-10895829,10897012-10897078,10898258-10898433,
10898450-10898583,10900165-10901594
Length = 669
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 41 WTVLRIVYSVIHHGCVVCLIPRWGNREF*NRLQIVQR 151
+T +++ ++H+GCVV L+ R G F +QI++R
Sbjct: 551 FTEYKVIPMMVHYGCVVDLLGRAG--RFLEAIQIIER 585
>07_01_0105 -
798883-798942,799118-799186,799282-799345,799434-799516,
799957-800022,800143-800233,800622-800779,801144-801338,
801499-801628,803016-803168,803877-803962
Length = 384
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 87 LSALFHDGGTENFKTAFRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIFELDP--RNH 260
L+ +H G N + A R ++GP LLV+ + ++ W + +IF +P H
Sbjct: 224 LAEFYHPGKEYNVRVASRYFKGPELLVD-LQDYDYSLDMWSLGCMFAGMIFRKEPFFYGH 282
Query: 261 LSEQDLMELAAIFG 302
+ L+++A + G
Sbjct: 283 DNHDQLVKIAKVLG 296
>04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337
Length = 516
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 51 SGSFIVLFITVVLSALFHDGGTENFKTAFRLYRGPFLLVEF 173
SG V + ++L++ FH G + T YRG FLL ++
Sbjct: 96 SGQCEVWILYIILASQFHAIGVFSVTTCLYEYRGEFLLFKY 136
>03_06_0052 -
31295839-31295883,31296312-31296380,31296458-31296521,
31296598-31296680,31297243-31297308,31297426-31297516,
31298090-31298247,31298432-31298476,31299189-31299318,
31300685-31300935
Length = 333
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 87 LSALFHDGGTENFKTAFRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIFELDP--RNH 260
L+ +H G N + A R ++GP LLV+ + ++ W + +IF +P H
Sbjct: 178 LAEFYHPGKEYNVRVASRYFKGPELLVD-LQDYDYSLDMWSLGCMFAGMIFRKEPFFYGH 236
Query: 261 LSEQDLMELAAIFG 302
+ L+++A + G
Sbjct: 237 DNHDQLVKIAKVLG 250
>03_02_0647 + 10154668-10156041
Length = 457
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 318 SGPKRHRISRPVPSNPAQIDDSVGP 244
S P + PVPSNPA + D+ GP
Sbjct: 348 SSPDTTATNAPVPSNPAAVADAGGP 372
>03_05_0045 -
20220955-20221046,20221599-20221641,20221715-20221792,
20222401-20222454,20222766-20222829,20222915-20222960,
20223049-20223121,20223530-20223601,20224023-20224075,
20224149-20224239,20226459-20226650
Length = 285
Score = 25.0 bits (52), Expect(2) = 6.1
Identities = 14/76 (18%), Positives = 37/76 (48%)
Frame = +3
Query: 228 VLIFELDPRNHLSEQDLMELAAIFGVVWALSILSFIYSASLSIPPFVNPLALVIIMLAFL 407
V +F+ +N +++ + A+ GV++ + + +IY + + P + P++ + I +
Sbjct: 106 VFLFQTKAKNLPTDKLRIIYMAVNGVIYVIQVCIWIYLGT-NDSPLLEPVSKIFISVVSF 164
Query: 408 FNPLKVFRHEARFWFL 455
L + R +F+
Sbjct: 165 LALLGFLIYGGRLFFM 180
Score = 21.0 bits (42), Expect(2) = 6.1
Identities = 11/50 (22%), Positives = 21/50 (42%)
Frame = +3
Query: 90 SALFHDGGTENFKTAFRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIF 239
S + DG + A+ L L+ + + +GW + V H++ F
Sbjct: 41 SPAWQDGAFFSLSAAYALVSAVALVQLIRIQLRVPEFGWTTQKVFHLMNF 90
>03_06_0061 +
31352703-31353037,31353145-31353274,31353708-31353902,
31354696-31354725,31355238-31355395,31355756-31355846,
31355924-31355989,31356331-31356413,31356495-31356558,
31356641-31356709,31356798-31356833
Length = 418
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/92 (22%), Positives = 41/92 (44%)
Frame = +3
Query: 87 LSALFHDGGTENFKTAFRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIFELDPRNHLS 266
L+ +H N + A R Y+GP LLV+ + ++ W + +IF +DP +
Sbjct: 266 LAEFYHPKMEYNARVASRSYKGPELLVDLLD-YDYSLDLWSLGCMFAAMIFRVDPFFN-G 323
Query: 267 EQDLMELAAIFGVVWALSILSFIYSASLSIPP 362
+ + +L I V+ +++ L + P
Sbjct: 324 QDNYDQLVKITEVLGTEDFYNYLEKYGLELDP 355
>01_06_0736 -
31585840-31586459,31586545-31587070,31588051-31588149,
31589344-31589427,31589458-31589775,31589907-31590113
Length = 617
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 90 SALFHDGGTEN-FKTAFRLYRGPFLLVEFIFLIGINVYGWR 209
+A+FHD + ++ L+ LLV +++++G ++GWR
Sbjct: 169 AAVFHDQSVKRKLQSLCELWYNGTLLVGWMWILGNELHGWR 209
>05_07_0276 + 28899378-28899953,28900010-28901242
Length = 602
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 156 FLLVEFIFLIGINVYGWRSSGVNHVLIFELDPRNHLS 266
FLL+ I L+ + +YG SG L +P NHL+
Sbjct: 325 FLLMAPILLLDLKIYGQWMSGGERRLSKVANPSNHLA 361
>05_01_0454 + 3610608-3613136
Length = 842
Score = 27.1 bits (57), Expect = 8.8
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 347 TRTVYKTQYTQGPN-DTEYRGQFHQILLR*MIPWVQFEDENVIDTGRSPAVY 195
TRT +T YT G N DT YR F ++L+ F+++ VI G VY
Sbjct: 473 TRTTSRTTYTSGTNSDTSYRIPF--VVLQEATN--HFDEQMVIGVGGFGKVY 520
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,828
Number of Sequences: 37544
Number of extensions: 322187
Number of successful extensions: 723
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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