Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G17
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...   162   2e-40
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    29   1.5  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine r...    29   2.6  
AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival...    28   4.5  
J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...    27   7.9  
AL033508-1|CAA22058.2|  821|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...    27   7.9  

>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score =  162 bits (393), Expect = 2e-40
 Identities = 76/172 (44%), Positives = 113/172 (65%), Gaps = 5/172 (2%)
 Frame = +3

Query: 9   EQQSPWTTFKVGLFSGSFIVLFITVVLSALFHDGGTENFK-TAFRLYRGPFLLVEFIFLI 185
           E+Q P TTF +GLF G+ I+L + ++L+ +      +  K  A RL+RGP LL   IFL 
Sbjct: 218 EKQKPLTTFSLGLFIGASIILLLAILLTWIASPARPQEPKWVAVRLFRGPLLLFLSIFLC 277

Query: 186 GINVYGWRSSGVNHVLIFELDPRNHLSEQDLMELAAIFGVVWALSILSFIYSASLSIPPF 365
           G+N+ GW ++GVNHVLIFE+DPRNHLS Q LM++A+   ++W+ ++L+++Y+  L IPPF
Sbjct: 278 GVNMAGWAAAGVNHVLIFEVDPRNHLSYQTLMQIASFMIMLWSFAVLAYLYAHMLHIPPF 337

Query: 366 VNPLALVIIMLAFLFNPL----KVFRHEARFWFLRICGRILAAPFMPVLYAD 509
             PLAL+++ L  L NP+     VF   +RFW L+ C +   +PF  V + D
Sbjct: 338 APPLALMVVCLILLLNPIAKPDSVFHRNSRFWLLKHCYKCFTSPFHFVTFTD 389


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 363  KAVCSNSHCI*NSIYSGPKRHRISRPVPSNPAQID 259
            +AVCS+ +     +YS  K+ ++ +P P+ P + D
Sbjct: 1838 RAVCSDKNDTLTQLYSDFKKEKLQKPRPATPPKFD 1872


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -3

Query: 283 SIKSCSDR*FRGSSSKMRT*LTPDDRQP-YTFMPIKNINSTRRNGPLYNLKAVLKFSVPP 107
           ++K+CS       SS   +   P +  P Y   P K  +ST +N  L NLK+      PP
Sbjct: 175 NLKNCSRELLSPKSSIFSSSPKPKETSPFYKTTPTKTFSSTPKNLKLENLKSPEDIKSPP 234

Query: 106 SWNK 95
              K
Sbjct: 235 PIKK 238


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 363  KAVCSNSHCI*NSIYSGPKRHRISRPVPSNPAQID 259
            +AVCS+ +     +YS  K+ ++ +P P+ P + D
Sbjct: 1838 RAVCSDKNDTLTQLYSDFKKEKLQKPRPATPPKFD 1872


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 124 KFSVPPSWNKADNTTVMNNTINDPENSPTLNVV 26
           +F+  PS N +D+  + +NT+++P N P  N++
Sbjct: 121 EFAYDPSLNPSDSHPMGSNTVSEPANVPFQNLL 153


>AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein20 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/53 (24%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
 Frame = +3

Query: 291 AIFGVVWALSILSFIY---SASLSIPPFVNPLALVIIMLAF---LFNPLKVFR 431
           + +G    +  ++++Y   + ++S+ PF++PLA+++++ A    L NP++ +R
Sbjct: 266 SFYGAALNIGFMNWVYWLSAVAVSMFPFLDPLAIILLLPALRRRLPNPIRKYR 318


>AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical
           protein Y48C3A.7 protein.
          Length = 813

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -3

Query: 373 GFTKGGMLKLALYIKLNILRAQTTPNIAASSIKSCSDR*FRGSSSKMRT*LTPDDRQPYT 194
           GFT   +  L     L  L+A+   N    S+K    R FR ++S++R  +T  DR+ Y 
Sbjct: 740 GFTGADLAALIHESSLLALQARVLEN--DESVKGVGMRHFREAASRIRPSVTEADRKKYE 797

Query: 193 FM 188
            M
Sbjct: 798 HM 799


>AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival
           CED-4-interactingprotein MAC-1 protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -3

Query: 373 GFTKGGMLKLALYIKLNILRAQTTPNIAASSIKSCSDR*FRGSSSKMRT*LTPDDRQPYT 194
           GFT   +      + L  L+A+   N    S+K    R FR ++S++R  +T  DR+ Y 
Sbjct: 740 GFTGADLAVFIHELSLLALQARVLEN--DESVKGVGMRHFREAASRIRPSVTEADRKKYE 797

Query: 193 FM 188
            M
Sbjct: 798 HM 799


>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 87  LSALFHDGGTENFKTAFRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIFELDP--RNH 260
           L+  +H     N + A R ++GP LLV++      ++  W    +   +IF  +P    H
Sbjct: 177 LAEFYHPRQDYNVRVASRYFKGPELLVDY-QCYDYSLDMWSLGCMLASMIFRKEPFFHGH 235

Query: 261 LSEQDLMELAAIFG 302
            +   L+ +A + G
Sbjct: 236 DNYDQLVRIAKVLG 249


>AL033508-1|CAA22058.2|  821|Caenorhabditis elegans Hypothetical
           protein Y106G6G.2 protein.
          Length = 821

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 23  VDHVQSWTVLRIVYSVIHHGCVVCLIPRWGNREF*N 130
           + H  ++T+  +  +V+H GCVV +   W ++ F N
Sbjct: 569 ISHPDTYTLEDLKKTVLHSGCVVHVANGWLDKVFDN 604


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 87  LSALFHDGGTENFKTAFRLYRGPFLLVEFIFLIGINVYGWRSSGVNHVLIFELDP--RNH 260
           L+  +H     N + A R ++GP LLV++      ++  W    +   +IF  +P    H
Sbjct: 177 LAEFYHPRQDYNVRVASRYFKGPELLVDY-QCYDYSLDMWSLGCMLASMIFRKEPFFHGH 235

Query: 261 LSEQDLMELAAIFG 302
            +   L+ +A + G
Sbjct: 236 DNYDQLVRIAKVLG 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,829,264
Number of Sequences: 27780
Number of extensions: 280875
Number of successful extensions: 741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)