Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G16
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0057 + 15484965-15484975,15485108-15485213,15486610-154868...    30   1.4  
03_02_0920 + 12410551-12410893,12410992-12411095,12411192-124112...    30   1.8  
01_04_0055 + 15462137-15462324,15467316-15467421,15468589-154688...    28   7.2  
10_08_0091 + 14747934-14748107,14750695-14751021                       27   9.6  

>01_04_0057 +
           15484965-15484975,15485108-15485213,15486610-15486828,
           15487268-15487594
          Length = 220

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 99  VTNKFISAIFLKIPFFKCKLVISIRLIDTEPSC 1
           V +KFIS I+   P  KCKL++S    ++ PSC
Sbjct: 40  VADKFISFIYGSKPE-KCKLIVSAHNYESTPSC 71


>03_02_0920 +
           12410551-12410893,12410992-12411095,12411192-12411297,
           12411388-12411607,12411733-12411917,12411988-12412103,
           12412208-12412279,12412551-12412598
          Length = 397

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 628 IVHKSNKPLNIHCTGDDHTYCMKF 557
           I+H+  KPLNI    DDH Y   F
Sbjct: 294 IIHRDLKPLNILIDSDDHIYITDF 317


>01_04_0055 +
           15462137-15462324,15467316-15467421,15468589-15468807,
           15469826-15470172,15471365-15471428,15471519-15471624,
           15471709-15471849,15473619-15473767,15473942-15474107,
           15474216-15474259
          Length = 509

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 99  VTNKFISAIFLKIPFFKCKLVISIRLIDTEPSC 1
           V +KFIS I    P  KCKL++S    ++ PSC
Sbjct: 99  VADKFISFISGSKPE-KCKLIVSSHNYESTPSC 130


>10_08_0091 + 14747934-14748107,14750695-14751021
          Length = 166

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 389 AARSGVPHIELYGP*KEKV*RPLVCKIVIVLELQAEIQSTL 511
           AARS V  +ELYGP KE     +VC    V +++A++   L
Sbjct: 81  AARSPVFSVELYGPMKESEPTGVVC----VQDMEAQVFKAL 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,420
Number of Sequences: 37544
Number of extensions: 347211
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)