Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G16
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep...    29   2.8  
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue...    29   2.8  
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    28   4.9  
Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
            homolog protein.
          Length = 1846

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 399  VGYLTLNYTALEKKKC-DDHWYVRL*LCWSYKRKYKAPSII*IHLI 533
            + Y+ +    ++K +C +++WY  + +CW Y  + +   +  +HL+
Sbjct: 1475 LNYIGMARKVIKKPECCENYWYKVMKMCWRYSPRDRPTFLQLVHLL 1520


>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
            formation protein 2 protein.
          Length = 1843

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 399  VGYLTLNYTALEKKKC-DDHWYVRL*LCWSYKRKYKAPSII*IHLI 533
            + Y+ +    ++K +C +++WY  + +CW Y  + +   +  +HL+
Sbjct: 1472 LNYIGMARKVIKKPECCENYWYKVMKMCWRYSPRDRPTFLQLVHLL 1517


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 150 RGLCVSAVSILFCIFILWYRSAVVKLLPLD 239
           R +CV  V +L C+F ++Y   ++ +L LD
Sbjct: 65  RLICVMLVILLLCLFEMFYGFKIMNMLELD 94


>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 341 KNCQLTDGINYPIHKSAARSGVPHIELY 424
           KNC + D + YP+ K  A   + HI+ +
Sbjct: 190 KNCCICDKVVYPVEKVLANKNLYHIQCF 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,444
Number of Sequences: 27780
Number of extensions: 326545
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)