Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G15
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   1.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.3  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   5.6  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   7.4  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.4  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    24   9.8  

>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +1

Query: 130 CFRQTTHNNRIKPLSFYLFLL*INLNKSAFFQPKY-RKIL----LLCFI-PIYD 273
           CF Q++    IK +  YLFL  I +++   F P   RK +    LL FI P YD
Sbjct: 706 CF-QSSQRRSIKNVIHYLFLSSIGVSREKIFDPSLSRKEIDSTDLLTFIKPFYD 758


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 317  FLIYYQLNLSTVMKLSYIGMKQSNNIFLYFGW 222
            FL+ Y L +ST +K   + +  +N +++ + W
Sbjct: 1257 FLLRYPLKVSTTLKQKLLIILLNNEMYMLYTW 1288


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -2

Query: 80 MPFS--RNTLPPLHPHTWKNNIDI 15
          +P+S   + LPP+HP + KN +DI
Sbjct: 23 IPYSLGADPLPPVHPLSLKNLVDI 46


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 306 LSIKLINSY-EVIIYWNETE**YFSIFWLEKRRFI 205
           L+  L+ S+  VI YW++    Y  ++WL K  F+
Sbjct: 88  LTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFL 122


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 325 LLTCNVYKLYDLDGSRCLLLTTAIFILIDLPMPRT 429
           L +CNV  L + D    L LT +IF+ +  P P+T
Sbjct: 122 LHSCNV--LMNNDEKNTLSLTPSIFLSVMKPCPKT 154


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 308 YYQLNLSTVMKLSYIGMKQSNNIFLYFGWKNADLFK 201
           +YQL L    +L  I  +  + + LYF +  AD FK
Sbjct: 156 WYQLLLGNKKQLDSINAEYGSQVALYFAF--ADFFK 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,158
Number of Sequences: 5004
Number of extensions: 36178
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)