Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G15
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0218 + 1433310-1435620,1435672-1435951,1436461-1436524,143...    29   2.4  
09_04_0703 - 19614057-19614264,19615305-19615407,19615880-196159...    28   4.2  
07_01_0876 - 7271317-7271796,7272087-7272275,7272603-7272926,727...    28   4.2  
05_05_0024 + 21613199-21613208,21613466-21613560,21613656-216137...    27   5.6  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     27   9.7  

>02_01_0218 +
           1433310-1435620,1435672-1435951,1436461-1436524,
           1436557-1436562
          Length = 886

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 241 ILLLCFIPIYDNFI-TVDKFN**YIKKINLLTCNVYKLYDLDGSRCL 378
           +LLLC +  YDN +  +D F     + ++   CNV  L+ L GS  L
Sbjct: 708 VLLLCSVKDYDNVVKVIDDFK-ETGRPVSAFLCNVLLLHTLRGSDLL 753


>09_04_0703 -
           19614057-19614264,19615305-19615407,19615880-19615973,
           19616216-19616229,19616384-19616595,19617653-19617940,
           19618275-19618362,19618444-19618515,19618597-19618672,
           19618755-19618813,19618953-19619016,19619253-19619402
          Length = 475

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 293 LSTVMKLSYIGMKQSNNIFLYFGWKNADLFKFIY 192
           L   ++  Y+ ++  +N   YF W   D+F+F+Y
Sbjct: 395 LQGYLEALYLSVRNGSNTRGYFVWSMFDMFEFLY 428


>07_01_0876 -
           7271317-7271796,7272087-7272275,7272603-7272926,
           7273028-7273261
          Length = 408

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 140 CLKHMHYYCHNACI 99
           CL+  H+YCH  C+
Sbjct: 295 CLQEFHFYCHRMCL 308


>05_05_0024 +
           21613199-21613208,21613466-21613560,21613656-21613713,
           21613843-21614037,21614237-21614316,21614402-21614512
          Length = 182

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 217 FFQPKYRKILLLCFIPIYDNFITVDKFN**YIKKINLLTC 336
           F  P Y   L L FI +  N + +  ++  YI  +NLL C
Sbjct: 34  FLMPWYW-YLALAFIDVQGNCLAIKAYHYSYITSVNLLNC 72


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -2

Query: 425 RGIGKSIKINMAVVSNKHLDPSKSYNLYTLHVNKLIFLIYYQLNLSTVMKLSYIGMKQSN 246
           + +G   K+   V+SN  L  +   +++  H++ LI L       S V+ +    MKQ N
Sbjct: 558 KDMGNLTKLEHLVLSNNQLSSTVPPSIF--HLSSLIQLDLSHNFFSDVLPVDIGNMKQIN 615

Query: 245 NIFL 234
           NI L
Sbjct: 616 NIDL 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,340,744
Number of Sequences: 37544
Number of extensions: 193327
Number of successful extensions: 372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)