Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G13
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.5  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.7  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    25   7.7  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 389  HVVTVRSNRYGYFNFT-SAEVTYKATEDATEVQYSFSSSPGEGAIVAF-KDYDRKFSSHI 562
            H   +R +R   FN+      TY A+E+  E++Y      G G  + F     ++F+ + 
Sbjct: 1274 HRQKIRISRKKIFNYALHLLATYAASENILEIEYEDEVGSGLGPTLEFYTSVSKEFTLNS 1333

Query: 563  LD 568
            LD
Sbjct: 1334 LD 1335


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 391 MGHISLWGNPLNLS--RQLSSNDCENLRVKTAVD 296
           M  ISLWGN  +LS    LS  + +NL+ +  V+
Sbjct: 184 MAQISLWGNATDLSLLTNLSYEELQNLQGQKVVE 217


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 510 SPGELLKEYWTSVASSVALYVTSADVKLK*PYLFDLTVTTWD 385
           +P ELL+E    V +SVAL + + DV  + P +    +   D
Sbjct: 626 TPAELLRENIDYVVNSVALKLNTLDVSPQLPIVMAYVIKNDD 667


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 247 IYTLQCRHGTRSGRETSRQRFSP*GFRSRWRTAVG 351
           +YTL  + GTR     ++   SP    S+WR  VG
Sbjct: 338 LYTLVEQEGTRWNSIANKLGTSPAACMSQWRFVVG 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,908
Number of Sequences: 5004
Number of extensions: 42391
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)