Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G13
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 62 2e-10
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14... 56 1e-08
04_04_0895 - 29168107-29168229,29168617-29170068 30 1.5
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019... 29 2.0
08_02_1283 - 25861355-25862755 28 6.0
06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261 28 6.0
01_06_0365 + 28767538-28767696,28768299-28768520,28768630-287688... 28 6.0
12_02_1243 + 27300978-27301682 27 7.9
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 27 7.9
01_05_0188 + 19055421-19056857 27 7.9
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 62.5 bits (145), Expect = 2e-10
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Frame = +2
Query: 107 MSAKLLSIILIVAAAVTADDEPAVARLLVSKQV-LNKYLVENMDILVKYTLYNVGTAPAV 283
M+ +L ++L+ AAA + D P L+ K+V L++ + V LYN G+A A
Sbjct: 3 MARSILLLLLLAAAASASADAPF---LVAHKKVSLSRPKPGVERLAVSLDLYNQGSATAY 59
Query: 284 DVKLVDSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKA- 460
DV + D + E F +V G++S +ER+ P SH + + G F + A +TY+
Sbjct: 60 DVSINDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVP 119
Query: 461 TEDATEVQYS 490
T+ A + YS
Sbjct: 120 TKAALQEAYS 129
>05_01_0021 -
148084-148191,148387-148488,148641-148727,148845-148979,
149109-149324,149772-150043,151346-151394,151521-151526,
151657-151728,152077-152185,152272-152370,153186-153364
Length = 477
Score = 56.4 bits (130), Expect = 1e-08
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Frame = +2
Query: 119 LLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKLV 298
LL ++L+ AA D P V + K L++ + V LYN G+A A DV L
Sbjct: 11 LLLLLLVPFAAAAGQDAPFV--VAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLN 68
Query: 299 DSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKA-TEDAT 475
D + E F ++ G S +E++ P SH + + G F + A +TY+ T+ A
Sbjct: 69 DDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITYRVPTKAAL 128
Query: 476 EVQYSFSSSPGEGAIVAFKDYDRKF 550
+ YS P + I+A + +KF
Sbjct: 129 QEAYSTPMFPLD--ILAERPPQQKF 151
>04_04_0895 - 29168107-29168229,29168617-29170068
Length = 524
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 381 LVCGGIRSISADSCPPTTAKTSG*KPLSTSFTSTAGAVPTL 259
L+ S S+ SCPP A +S LST+ TS A T+
Sbjct: 38 LLLASAASSSSSSCPPDAASSSSSVRLSTNGTSAGAAAVTV 78
>05_04_0181 +
18799445-18799593,18801112-18801163,18801964-18801999,
18802098-18802233,18802313-18802512
Length = 190
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 335 GGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTY 454
GG +A+ E P Q + +T + YGY NF+ EV +
Sbjct: 150 GGSSTAQHEIGPSQLDEPPPITQPTQDYGYINFSGVEVAH 189
>08_02_1283 - 25861355-25862755
Length = 466
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 104 KMSAKLLSIILIVAAAVTADDEPAVARLL 190
++SA S +++VAAA D +PA ARLL
Sbjct: 105 ELSAPSPSRVVVVAAAARPDPDPAHARLL 133
>06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261
Length = 183
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 374 VGESAQSQPTAVLQRLRKPQGENRCR 297
VG + + A+L+RLR+P+GE + R
Sbjct: 81 VGATLAAVALAILRRLRRPRGEGKAR 106
>01_06_0365 +
28767538-28767696,28768299-28768520,28768630-28768868,
28769499-28770024,28770115-28770388,28770495-28771134,
28771220-28771448,28771682-28771948,28772031-28772294,
28772700-28773344
Length = 1154
Score = 27.9 bits (59), Expect = 6.0
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = +2
Query: 131 ILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDV----KLV 298
+L++ A +A D + RL+ ++ LN+ ++ ++V + L + A + V K+V
Sbjct: 415 VLLLDEATSALDVES-ERLV--QEALNRVMIGRTTLIVAHRLSTIKNADCIAVVHQGKIV 471
Query: 299 DSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVV 397
D G H E+ G S I+ T H V
Sbjct: 472 DQGSHDELIKDPDGAYSQLIQLQQTHTEEMHDV 504
>12_02_1243 + 27300978-27301682
Length = 234
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 526 SNNGTFTRRAAEGVLDFGGIFSCFVCYFSRREVKVTV 416
+N G T ++ G D GG F C +C+ +E VT+
Sbjct: 3 ANVGESTSGSSSGGADSGGSFECNICFELPQEPIVTL 39
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 86 LQKKLDKMSAKLLSIILIVAAAVTADDEPAVARLLVSKQVLN-KYLVEN-MDILVKYTLY 259
++KK++++ +L++I L V + DD+P R K++ Y +E+ +D+ V + +
Sbjct: 38 VRKKMEQLRKELITINLAVEQYASMDDDPDKLRRAWVKEIRELAYDIEDCIDLFVHRSNH 97
Query: 260 NVGTAPAVDVKLVDS 304
V L+DS
Sbjct: 98 EFSAGGGVRRLLLDS 112
>01_05_0188 + 19055421-19056857
Length = 478
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 83 ILQKKLDKMSAKLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVE 226
+L ++ D+++A+L ++ + AA A VARL+ +++ YLVE
Sbjct: 26 VLLRRPDELAARLRAVSSPLHAATAAVLAAGVARLVRARRARGVYLVE 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,710,164
Number of Sequences: 37544
Number of extensions: 280986
Number of successful extensions: 668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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