Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G13
(568 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74104-1|CAA52207.1| 183|Homo sapiens translocon-associated pro... 147 3e-35
D37991-1|BAA07206.1| 183|Homo sapiens beta-signal sequence rece... 147 3e-35
CR456973-1|CAG33254.1| 183|Homo sapiens SSR2 protein. 147 3e-35
BC000341-1|AAH00341.2| 183|Homo sapiens signal sequence recepto... 147 3e-35
AL355388-11|CAH72631.1| 202|Homo sapiens signal sequence recept... 147 3e-35
AK222600-1|BAD96320.1| 183|Homo sapiens signal sequence recepto... 146 6e-35
BX649192-1|CAE46211.1| 143|Homo sapiens hypothetical protein pr... 120 4e-27
AL355388-12|CAH72632.1| 146|Homo sapiens signal sequence recept... 120 4e-27
>X74104-1|CAA52207.1| 183|Homo sapiens translocon-associated
protein protein.
Length = 183
Score = 147 bits (356), Expect = 3e-35
Identities = 73/151 (48%), Positives = 104/151 (68%)
Frame = +2
Query: 116 KLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKL 295
+LLS +++ AVT +E A RLL SK +LN+Y VE D+ ++Y +YNVG++ A+DV+L
Sbjct: 2 RLLSFVVLALFAVTQAEEGA--RLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 296 VDSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATEDAT 475
D F PE F +V G L+ + +RI P +NVSH V +R + GYFNFTSA +TY A ED
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGP 119
Query: 476 EVQYSFSSSPGEGAIVAFKDYDRKFSSHILD 568
V S +S+PG+G I+A +++DR+FS H LD
Sbjct: 120 VVIGS-TSAPGQGGILAQREFDRRFSPHFLD 149
>D37991-1|BAA07206.1| 183|Homo sapiens beta-signal sequence
receptor protein.
Length = 183
Score = 147 bits (356), Expect = 3e-35
Identities = 73/151 (48%), Positives = 104/151 (68%)
Frame = +2
Query: 116 KLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKL 295
+LLS +++ AVT +E A RLL SK +LN+Y VE D+ ++Y +YNVG++ A+DV+L
Sbjct: 2 RLLSFVVLALFAVTQAEEGA--RLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 296 VDSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATEDAT 475
D F PE F +V G L+ + +RI P +NVSH V +R + GYFNFTSA +TY A ED
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGP 119
Query: 476 EVQYSFSSSPGEGAIVAFKDYDRKFSSHILD 568
V S +S+PG+G I+A +++DR+FS H LD
Sbjct: 120 VVIGS-TSAPGQGGILAQREFDRRFSPHFLD 149
>CR456973-1|CAG33254.1| 183|Homo sapiens SSR2 protein.
Length = 183
Score = 147 bits (356), Expect = 3e-35
Identities = 73/151 (48%), Positives = 104/151 (68%)
Frame = +2
Query: 116 KLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKL 295
+LLS +++ AVT +E A RLL SK +LN+Y VE D+ ++Y +YNVG++ A+DV+L
Sbjct: 2 RLLSFVVLALFAVTQAEEGA--RLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 296 VDSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATEDAT 475
D F PE F +V G L+ + +RI P +NVSH V +R + GYFNFTSA +TY A ED
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGP 119
Query: 476 EVQYSFSSSPGEGAIVAFKDYDRKFSSHILD 568
V S +S+PG+G I+A +++DR+FS H LD
Sbjct: 120 VVIGS-TSAPGQGGILAQREFDRRFSPHFLD 149
>BC000341-1|AAH00341.2| 183|Homo sapiens signal sequence receptor,
beta (translocon-associated protein beta) protein.
Length = 183
Score = 147 bits (356), Expect = 3e-35
Identities = 73/151 (48%), Positives = 104/151 (68%)
Frame = +2
Query: 116 KLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKL 295
+LLS +++ AVT +E A RLL SK +LN+Y VE D+ ++Y +YNVG++ A+DV+L
Sbjct: 2 RLLSFVVLALFAVTQAEEGA--RLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59
Query: 296 VDSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATEDAT 475
D F PE F +V G L+ + +RI P +NVSH V +R + GYFNFTSA +TY A ED
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGP 119
Query: 476 EVQYSFSSSPGEGAIVAFKDYDRKFSSHILD 568
V S +S+PG+G I+A +++DR+FS H LD
Sbjct: 120 VVIGS-TSAPGQGGILAQREFDRRFSPHFLD 149
>AL355388-11|CAH72631.1| 202|Homo sapiens signal sequence receptor,
beta (translocon-associated protein beta) protein.
Length = 202
Score = 147 bits (356), Expect = 3e-35
Identities = 73/151 (48%), Positives = 104/151 (68%)
Frame = +2
Query: 116 KLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKL 295
+LLS +++ AVT +E A RLL SK +LN+Y VE D+ ++Y +YNVG++ A+DV+L
Sbjct: 21 RLLSFVVLALFAVTQAEEGA--RLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 78
Query: 296 VDSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATEDAT 475
D F PE F +V G L+ + +RI P +NVSH V +R + GYFNFTSA +TY A ED
Sbjct: 79 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGP 138
Query: 476 EVQYSFSSSPGEGAIVAFKDYDRKFSSHILD 568
V S +S+PG+G I+A +++DR+FS H LD
Sbjct: 139 VVIGS-TSAPGQGGILAQREFDRRFSPHFLD 168
>AK222600-1|BAD96320.1| 183|Homo sapiens signal sequence receptor,
beta precursor variant protein.
Length = 183
Score = 146 bits (353), Expect = 6e-35
Identities = 73/151 (48%), Positives = 103/151 (68%)
Frame = +2
Query: 116 KLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKL 295
+LLS +++ AVT +E A RLL SK +LN+Y VE D+ ++Y YNVG++ A+DV+L
Sbjct: 2 RLLSFVVLALFAVTQAEEGA--RLLASKSLLNRYAVEGRDLTLQYNTYNVGSSAALDVEL 59
Query: 296 VDSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATEDAT 475
D F PE F +V G L+ + +RI P +NVSH V +R + GYFNFTSA +TY A ED
Sbjct: 60 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGP 119
Query: 476 EVQYSFSSSPGEGAIVAFKDYDRKFSSHILD 568
V S +S+PG+G I+A +++DR+FS H LD
Sbjct: 120 VVIGS-TSAPGQGGILAQREFDRRFSPHFLD 149
>BX649192-1|CAE46211.1| 143|Homo sapiens hypothetical protein
protein.
Length = 143
Score = 120 bits (289), Expect = 4e-27
Identities = 59/122 (48%), Positives = 82/122 (67%)
Frame = +2
Query: 116 KLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKL 295
+LLS +++ AVT +E A RLL SK +LN+Y VE D+ ++Y +YNVG++ A+DV+L
Sbjct: 23 RLLSFVVLALFAVTQAEEGA--RLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 80
Query: 296 VDSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATEDAT 475
D F PE F +V G L+ + +RI P +NVSH V +R + GYFNFTSA +TY A ED
Sbjct: 81 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGP 140
Query: 476 EV 481
V
Sbjct: 141 VV 142
>AL355388-12|CAH72632.1| 146|Homo sapiens signal sequence receptor,
beta (translocon-associated protein beta) protein.
Length = 146
Score = 120 bits (289), Expect = 4e-27
Identities = 59/122 (48%), Positives = 82/122 (67%)
Frame = +2
Query: 116 KLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKL 295
+LLS +++ AVT +E A RLL SK +LN+Y VE D+ ++Y +YNVG++ A+DV+L
Sbjct: 21 RLLSFVVLALFAVTQAEEGA--RLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 78
Query: 296 VDSGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATEDAT 475
D F PE F +V G L+ + +RI P +NVSH V +R + GYFNFTSA +TY A ED
Sbjct: 79 SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGP 138
Query: 476 EV 481
V
Sbjct: 139 VV 140
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,823,122
Number of Sequences: 237096
Number of extensions: 1581224
Number of successful extensions: 3098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3092
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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