Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G13
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41274-1|AAA82458.1| 188|Caenorhabditis elegans Hypothetical pr... 108 2e-24
Z68879-2|CAA93083.1| 182|Caenorhabditis elegans Hypothetical pr... 51 5e-07
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 35 0.035
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 35 0.035
AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein. 35 0.035
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 35 0.035
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 35 0.035
U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 27 7.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 9.4
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 27 9.4
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 27 9.4
>U41274-1|AAA82458.1| 188|Caenorhabditis elegans Hypothetical
protein T04G9.5 protein.
Length = 188
Score = 108 bits (260), Expect = 2e-24
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 107 MSAKLLSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVD 286
M L +++ +V + V + A +L KQ L+ Y VENMD +++Y LYNVG PA
Sbjct: 1 MKFSLFALLFVVVSCVDVGTQTRDAFILAHKQPLSTYAVENMDFVLEYGLYNVGDKPAQK 60
Query: 287 VKLVD-SGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKAT 463
V + D F F +V G L E+IP +NV+H V +R +G+FN+T+A+VTY
Sbjct: 61 VTIDDRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTAAQVTYYTD 120
Query: 464 EDATEVQYSFSSSPGEGAIVAFKDYDRKFS 553
+ V + +++PGEG I ++YDR+F+
Sbjct: 121 NENHHV--TLTNTPGEGYIYRQREYDRRFA 148
>Z68879-2|CAA93083.1| 182|Caenorhabditis elegans Hypothetical
protein K08F4.3 protein.
Length = 182
Score = 51.2 bits (117), Expect = 5e-07
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +2
Query: 122 LSIILIVAAAVTADDEPAVARLLVSKQVLNKYLVENMDILVKYTLYNVGTAPAVDVKLVD 301
+ ++ ++ +A+ A D A A++L+ K + KY V + +Y + N+G +PA+ V+L D
Sbjct: 1 MQLVFLILSALAAAD--ASAKILIGKSFVTKYPVAQRENAFEYQIINIGLSPALKVELSD 58
Query: 302 -SGFHPEVFAVVGGQLSAEIERIPPQTNVSHVVTV 403
F + F ++ G +A IP + + H + V
Sbjct: 59 LKSFPTDRFEILKGSATASFPVIPANSTIYHHIVV 93
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 35.1 bits (77), Expect = 0.035
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 317 EVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATE-DATEVQYSF 493
+V AV+G Q A+ PP+ VS T ++N+ YF+ T + Y TE DA +
Sbjct: 43 QVPAVLGAQSQAQTFYQPPEHQVSSSTTDQNNQINYFDQTKIKTEYIKTEYDAHLQSPTL 102
Query: 494 SSSPGE 511
SSS +
Sbjct: 103 SSSTNQ 108
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 35.1 bits (77), Expect = 0.035
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 317 EVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATE-DATEVQYSF 493
+V AV+G Q A+ PP+ VS T ++N+ YF+ T + Y TE DA +
Sbjct: 123 QVPAVLGAQSQAQTFYQPPEHQVSSSTTDQNNQINYFDQTKIKTEYIKTEYDAHLQSPTL 182
Query: 494 SSSPGE 511
SSS +
Sbjct: 183 SSSTNQ 188
>AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein.
Length = 233
Score = 35.1 bits (77), Expect = 0.035
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 317 EVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATE-DATEVQYSF 493
+V AV+G Q A+ PP+ VS T ++N+ YF+ T + Y TE DA +
Sbjct: 123 QVPAVLGAQSQAQTFYQPPEHQVSSSTTDQNNQINYFDQTKIKTEYIKTEYDAHLQSPTL 182
Query: 494 SSSPGE 511
SSS +
Sbjct: 183 SSSTNQ 188
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 35.1 bits (77), Expect = 0.035
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 317 EVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATE-DATEVQYSF 493
+V AV+G Q A+ PP+ VS T ++N+ YF+ T + Y TE DA +
Sbjct: 43 QVPAVLGAQSQAQTFYQPPEHQVSSSTTDQNNQINYFDQTKIKTEYIKTEYDAHLQSPTL 102
Query: 494 SSSPGE 511
SSS +
Sbjct: 103 SSSTNQ 108
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 35.1 bits (77), Expect = 0.035
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 317 EVFAVVGGQLSAEIERIPPQTNVSHVVTVRSNRYGYFNFTSAEVTYKATE-DATEVQYSF 493
+V AV+G Q A+ PP+ VS T ++N+ YF+ T + Y TE DA +
Sbjct: 119 QVPAVLGAQSQAQTFYQPPEHQVSSSTTDQNNQINYFDQTKIKTEYIKTEYDAHLQSPTL 178
Query: 494 SSSPGE 511
SSS +
Sbjct: 179 SSSTNQ 184
>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical
protein F31D5.5 protein.
Length = 1788
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Frame = +2
Query: 56 LAGFCFSFK--ILQKKLDKMSAKLLSIILIVAAAVTADD 166
++GFC + K IL+K L+ M + LLSI+LI +++VTA +
Sbjct: 13 MSGFCHNIKRKILKKILNGMRSTLLSILLI-SSSVTAQN 50
>Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical
protein ZK1053.4 protein.
Length = 667
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 164 DEPAVARLLVSKQVLNKYLVENMDILVKYTLYN-VGTAPAVDVKLVDSGFHPEVFAVVGG 340
+EP++A + S+Q LVE D L+ T+ + ++ ++ P A
Sbjct: 59 EEPSIADAIASRQEFLNKLVETTDQLIDITVDKFISQLKNCHIRKPETPSEPSREASPAP 118
Query: 341 QLSAEIERIPPQT 379
+LS+ ERI +T
Sbjct: 119 RLSSPFERIIDET 131
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -2
Query: 402 TVTTWDTLVCGGIRSISADSCPPTTAKTSG*KPLSTSFTST 280
T TT D C S S S PT+ +S P STS T+T
Sbjct: 820 TETTTDAEGCKKTSSTSKISTTPTSPTSSKPTPTSTSMTTT 860
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 169 ASCGEAISIEASVEQISCRKYGHFS*IYTLQCRHGTRSGRETSR 300
AS E+ S S EQ+S K + +HG RS RET R
Sbjct: 726 ASTSESSSSAPSAEQVSTPKKSKKNKEKRRDQQHGERSSRETER 769
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -1
Query: 280 CGCRADIVKCIFN*NVHIFYKIFVQHLLRY**PRHSWLIVGGHRCGNDQYY 128
C C ++ FN +H+ + HL+ + P+ L V ++ +D Y+
Sbjct: 1988 CLCACFVLFIFFNFKIHVIFTTLSSHLISFIDPKGGPLPVRCYKQQDDSYW 2038
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 492 KEYWTSVASSVALYVTSADVKLK*PYLF-DLTVTTWDTLVCGGIRSIS---ADSCPPT 331
K+ +VA A AD+ ++ P LF ++TVT ++L+ G ++ A CPPT
Sbjct: 326 KDGLMTVAQMAAASANLADIDIR-PTLFSNVTVTGGNSLILGFTERLNYALATKCPPT 382
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,634
Number of Sequences: 27780
Number of extensions: 248039
Number of successful extensions: 659
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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