Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G13
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 104 YPIFSVKF*N*NRNQLKCEFKMTNDRTWLT 15
           Y + S+K+ N  +  + C+ ++   R+W+T
Sbjct: 328 YNLMSIKYRNAFKQTICCKTRIIGRRSWVT 357


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 369 GIRSISADSCPPTTAKTSG*KPLSTSFTSTAGAVPTL*SVYLTKMSI 229
           GI+   + S    + K S  K    S TSTAG  PT  +  +T MSI
Sbjct: 698 GIKRSGSHSWEGDSFKVS--KHEEVSRTSTAGQFPTNVATTVTSMSI 742


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 368 PPQTNVSHVVTVRSNRY 418
           PPQ  +SH    R +RY
Sbjct: 127 PPQEVISHYRRTRRDRY 143


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 346 QLSSNDCENLRVKTAVD*FHVHCGCRADIVKCI 248
           ++ S +C+ ++  +AV    V C    D  +CI
Sbjct: 40  EIYSKECDEMKKDSAVKGIPVSCISGRDRYECI 72


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 346 QLSSNDCENLRVKTAVD*FHVHCGCRADIVKCI 248
           ++ S +C+ ++  +AV    V C    D  +CI
Sbjct: 40  EIYSKECDEMKKDSAVKGIPVSCISGRDRYECI 72


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 346 QLSSNDCENLRVKTAVD*FHVHCGCRADIVKCI 248
           ++ S +C+ ++  +AV    V C    D  +CI
Sbjct: 40  EIYSKECDEMKKDSAVKGIPVSCISGRDRYECI 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,291
Number of Sequences: 438
Number of extensions: 3223
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)