Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G12
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 47 2e-06
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 28 0.67
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 27 1.2
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 6.3
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 8.3
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 8.3
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 8.3
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 8.3
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 46.8 bits (106), Expect = 2e-06
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +2
Query: 239 QIGGEKNGGTRTVLL--KSRKSFYPTQDKIRGRSHGKSFSKHVRRT--RPNLTPGTVCIL 406
++ G KNGG R VL ++ +YP + + K K VR T R +L PGTVCIL
Sbjct: 5 KVNGAKNGGERMVLPAGEAAAKYYPAYRE----NVPKKARKAVRPTKLRASLAPGTVCIL 60
Query: 407 LAGRHAGKR 433
LAGR GKR
Sbjct: 61 LAGRFRGKR 69
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 0.67
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 117 SETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQP 227
SET S S K+G T+RR S R +KLK +P
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +2
Query: 269 RTVLLKSRKSFYPTQDKIRGR----SHGKSFSKHVRRTRPNLTP 388
RT+L + K FYP GR H SK R+ R TP
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTP 145
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 75 VSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK 242
++ S ++RG T E V + G T+ Y SLS+ ++K +N P SK
Sbjct: 189 LATSASNSDRGASTPEMVVKAEKREGSTSPIPYSSLSI--AERIKQAQNTPFLESK 242
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 296 SFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 433
+FY R SH S S ++P LT + +L + H +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.0 bits (52), Expect = 6.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 438 CSLECCRVVCYSSLGPF 488
C+ ECCR++ S PF
Sbjct: 1422 CAQECCRILLTDSKSPF 1438
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = +3
Query: 324 GVVLMARVSVNMCVGRDLTSLPAQCAFCWRADTLASVSCSLECCRVVCYSSLG 482
G + + + C TS QC + +S+SC + C+V C + G
Sbjct: 403 GRICQDSLGMGSCASGVCTSASRQCK---KLTNFSSLSCHSDSCKVSCQNEDG 452
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 218 SWAFQLSGSSYRQTYI*PSCGTSCFWRNG 132
SW QLS SS+ +C SC RNG
Sbjct: 196 SWVVQLSFSSWNVVGDSATCLLSCSSRNG 224
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 438 CSLECCRVVCYSSL 479
CSLE +VCYSSL
Sbjct: 764 CSLEVGPIVCYSSL 777
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 462 PLGNTPTSTTRLPACLPANR 403
P N T TRLP +P+NR
Sbjct: 330 PRFNLATGATRLPFAIPSNR 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,865
Number of Sequences: 5004
Number of extensions: 39444
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -