Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G11
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 281 3e-77
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 174 5e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 165 4e-42
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 74 1e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 8e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 47 2e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 44 8e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 43 3e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.062
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 26 3.1
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 7.2
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 24 9.5
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 24 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 281 bits (690), Expect = 3e-77
Identities = 134/148 (90%), Positives = 141/148 (95%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 187
+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAG
Sbjct: 123 IFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 182
Query: 188 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 367
RDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYEL
Sbjct: 183 RDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYEL 242
Query: 368 PDGQVITIGNERFRCPEALFQPSFLGME 451
PDGQVITIGNERFR PEALFQPS LG+E
Sbjct: 243 PDGQVITIGNERFRAPEALFQPSALGLE 270
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 174 bits (424), Expect = 5e-45
Identities = 78/148 (52%), Positives = 108/148 (72%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 187
+FE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AG
Sbjct: 123 MFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAG 182
Query: 188 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 367
RD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + ++ L ++Y L
Sbjct: 183 RDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTL 242
Query: 368 PDGQVITIGNERFRCPEALFQPSFLGME 451
PDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 243 PDGRVIKVGSERYECPECLFQPHLVGSE 270
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 165 bits (400), Expect = 4e-42
Identities = 74/147 (50%), Positives = 103/147 (70%)
Frame = +2
Query: 11 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 190
+ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GR
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGR 188
Query: 191 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELP 370
D+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+LP
Sbjct: 189 DVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLP 248
Query: 371 DGQVITIGNERFRCPEALFQPSFLGME 451
D Q IT+G E F PE LF P +G E
Sbjct: 249 DNQTITLGTECFSAPEVLFNPEMMGSE 275
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 93.1 bits (221), Expect = 2e-20
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHA 163
+FE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +
Sbjct: 146 MFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSS 205
Query: 164 ILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMA--TA 331
I + LAGRD+T ++ +L +R S TAER IKE+ CYV D +E +
Sbjct: 206 IKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDR 260
Query: 332 ASSSSLEKSYELPDGQ--VITIGNERFRCPEALFQP 433
L+ + E G I +G ERF PE F P
Sbjct: 261 EPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 73.7 bits (173), Expect = 1e-14
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 20/135 (14%)
Frame = +2
Query: 92 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 271
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 272 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITI 391
+IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 392 GNERFRCPEALFQPS 436
NERF PE LF PS
Sbjct: 277 SNERFMIPELLFSPS 291
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.4 bits (125), Expect = 8e-09
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 181
+FE +N P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+
Sbjct: 138 LFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISW 197
Query: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 355
G + YL+K+ + SF + C+V+ D+ ++A A LE+
Sbjct: 198 GGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILER 255
Score = 24.6 bits (51), Expect = 7.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 398 ERFRCPEALFQPSFLGME 451
E+ R PE +F PS +G++
Sbjct: 594 EQIRVPEVIFSPSIVGID 611
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 46.8 bits (106), Expect = 2e-06
Identities = 27/91 (29%), Positives = 44/91 (48%)
Frame = +2
Query: 11 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 190
FE P +A + ++ LYA G G+V+D G + PI +G + A +L L GR
Sbjct: 170 FEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229
Query: 191 DLTDYLMKILTERGYSFTTTAEREIVRDIKE 283
+T +L +L E + ++ + DI E
Sbjct: 230 YMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 44.4 bits (100), Expect = 8e-06
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 187
+FE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSG 180
Query: 188 RDLTDYLMKILTERGY 235
+ D L + L ++ +
Sbjct: 181 NAINDILAQTLRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 42.7 bits (96), Expect = 3e-05
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +2
Query: 236 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 415
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 416 EALFQPSF 439
E LF PSF
Sbjct: 300 EILFNPSF 307
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.062
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +2
Query: 50 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 229
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 230 GYSF 241
+ +
Sbjct: 340 HFPY 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 1.8
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +3
Query: 18 PSTHPPCT*LSRPCSHC-TRPV--VPPVSCWIPAMVYPTQYPSTRVTPYRTPS 167
P HPP LS+P S P+ VPPV + + P PS P PS
Sbjct: 987 PKDHPPSAPLSKPVSTSPAAPLARVPPVP-KLSSKAPPVPLPSADAPPIPVPS 1038
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 75 PVVPPVSCWIPAMVYPTQYPSTRVTPY 155
P+ WIP MVYP + T+ TP+
Sbjct: 513 PIYSKSDGWIPVMVYP--FIDTKQTPF 537
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 7.2
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 104 SGDGVSHTVPIYEGYALP 157
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 7.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 275 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 382
IKEKL VA EQE + SSL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 102 SSTIPVVRPDAYSESTAWIATYMAGVLKVSNTS 4
SS I PD+ SEST +Y + ++TS
Sbjct: 223 SSIISAAPPDSASESTPASTSYASSTTSATSTS 255
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.2 bits (50), Expect = 9.5
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 290 CYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNE-RFRCP 415
CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 75 PVVPPVSCWIPAMVYPTQYPSTRVTPYRTPS 167
PV PV + P M P+Q+ S +P TP+
Sbjct: 599 PVGYPVPGYTPYMRNPSQHTSVAPSPNGTPT 629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,341
Number of Sequences: 5004
Number of extensions: 34334
Number of successful extensions: 116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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