Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G09
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0646 + 12606569-12606582,12608702-12608750,12609387-126095... 72 5e-13
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727... 58 5e-09
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 58 6e-09
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 36 0.030
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558 29 3.4
06_03_1158 - 28080330-28080647,28080726-28080949,28081213-280814... 29 4.5
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425... 29 4.5
11_06_0588 + 25272067-25274850 28 5.9
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792 28 7.8
05_06_0216 - 26453029-26454597 28 7.8
>02_02_0646 +
12606569-12606582,12608702-12608750,12609387-12609546,
12610372-12610519,12610610-12610687,12611935-12612019,
12612098-12612157
Length = 197
Score = 71.7 bits (168), Expect = 5e-13
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +1
Query: 436 NELILQSVLNALYESVSMLLRRNVERRILFDNLDAVMLVFDEICDRGVILDADPTSIVAR 615
NELI+ +VL +SV +LLR +VE+R +NLD ++L DEI D G+IL+ D +I +
Sbjct: 104 NELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCIDEIVDGGIILETDANTIAGK 163
Query: 616 AALRTED--VPLGEQTVAQVL 672
A D P EQT++Q L
Sbjct: 164 VATNAVDGSAPFSEQTISQAL 184
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +3
Query: 306 AFEKNLFNKTHRANA----EIIMLDGLTSVYKSNVDLFFYV 416
AFEK++F KT + NA EI + DG VYK DL F+V
Sbjct: 57 AFEKSVFTKTLKTNARSEAEITLFDGYIVVYKFVQDLHFFV 97
>01_06_1282 +
35972234-35972244,35972451-35972522,35972714-35972747,
35973247-35973360,35974833-35975036,35975290-35975449,
35976093-35976240,35976345-35976422,35976854-35976938,
35977142-35977213
Length = 325
Score = 58.4 bits (135), Expect = 5e-09
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = +1
Query: 436 NELILQSVLNALYESVSMLLRRNVERRILFDNLDAVMLVFDEICDRGVILDADPTSIVAR 615
NELIL SVL E++ LLR V RR +NLD + L DE+ D G++L+ D +I+ +
Sbjct: 228 NELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLDEVVDGGIVLETDAKAILEK 287
Query: 616 AA 621
+
Sbjct: 288 VS 289
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 285 PTTKEQKAFEKNLFNKTH----RANAEIIMLDGLTSVYKSNVDLFFYVIGSSHD 434
P+ ++AFEK++F KT R AEI+M D VYK DL F+V G +
Sbjct: 174 PSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEE 227
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/62 (40%), Positives = 41/62 (66%)
Frame = +1
Query: 436 NELILQSVLNALYESVSMLLRRNVERRILFDNLDAVMLVFDEICDRGVILDADPTSIVAR 615
NELIL SVL ++V ++LR NV++R +NLD ++L DEI D G++L+ + + I +
Sbjct: 84 NELILASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDEIVDGGIVLETEGSVIAEK 143
Query: 616 AA 621
+
Sbjct: 144 VS 145
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +3
Query: 285 PTTKEQKAFEKNLFNKTHRANA----EIIMLDGLTSVYKSNVDLFFYVIGSSHD 434
PT + AFEK++F KT +A A EI+M DG VYK DL F+V G +
Sbjct: 30 PTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 35.9 bits (79), Expect = 0.030
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -1
Query: 238 IQDAHSLYYVHCWFKK*AFHGSVDHCFYIKTLLIRNTF 125
+ + +LY++ C+F K F G V + +I+ L+R+TF
Sbjct: 461 LPSSSTLYFIACYFSKIGFQGDVSNSIFIRKNLLRSTF 498
>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
Length = 852
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 262 QVYDKDVCPQLKNRRHLKRICSIRLTEQM 348
+V D D C LK RRHLK IC I L + +
Sbjct: 506 KVLDLDGCKGLK-RRHLKNICGIYLLKYL 533
>06_03_1158 -
28080330-28080647,28080726-28080949,28081213-28081423,
28081536-28081708,28082093-28082156,28082353-28082514
Length = 383
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 475 ESVSMLLRRNVERRILFDNLDAVMLVFDEICDRGVILDAD-PTSIVARAAL 624
E V +L+RR R L D +M+ D+IC R L AD IV R L
Sbjct: 207 EDVDLLIRR--AERCLEAGADMIMIDADDICQRADSLRADIVAKIVGRLGL 255
>05_04_0288 +
19839597-19839821,19841882-19842107,19842494-19842582,
19845184-19845387,19845463-19845717,19845796-19846011,
19846611-19846766,19846880-19847039,19847702-19847788,
19847789-19847940,19848006-19848143,19848714-19848788,
19849166-19849444
Length = 753
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +1
Query: 439 ELILQSV--LNALYESVSMLLRRNVERRILFDNLDAV 543
EL+L+ + L +Y+SV M + + ERRIL D +D+V
Sbjct: 475 ELVLKKMIELEEIYKSVHMDIDSDYERRILNDLIDSV 511
>11_06_0588 + 25272067-25274850
Length = 927
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 262 QVYDKDVCPQLKNRRHLKRICSI 330
+V D D C LK RRHLK IC I
Sbjct: 581 KVLDLDSCKGLK-RRHLKNICGI 602
>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
Length = 622
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 630 SPKGSSSYYGCWIRIQNNSSVAYFVENQHHS 538
+PKGSS Y C + I S++ EN+ S
Sbjct: 347 NPKGSSCSYSCQVEIPVVESISPLTENESES 377
>05_06_0216 - 26453029-26454597
Length = 522
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 84 LVPNSCSPGDPLFRAPHRVSPALFP 10
+VP+SCSP PL R+ R+ A P
Sbjct: 361 IVPSSCSPSPPLLRSLRRLLVADVP 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,798,635
Number of Sequences: 37544
Number of extensions: 387148
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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