Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G09
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...    90   2e-18
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    30   1.7  
U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z81045-4|CAB54202.2|  402|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81139-6|CAH60791.2|  358|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical ...    28   7.0  

>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 35/78 (44%), Positives = 60/78 (76%)
 Frame = +1

Query: 436 NELILQSVLNALYESVSMLLRRNVERRILFDNLDAVMLVFDEICDRGVILDADPTSIVAR 615
           NEL L + L  LY++VS++LR+NVE++ L D++D +ML+ DEICD G+I++ D  ++V R
Sbjct: 89  NELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIIDEICDEGIIMETDAQAVVQR 148

Query: 616 AALRTEDVPLGEQTVAQV 669
            AL++++V   +Q+V+Q+
Sbjct: 149 TALKSDEVSFSDQSVSQI 166



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 31/50 (62%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
 Frame = +3

Query: 288 TTKEQKAFEKNLFNKTHR-ANAEIIMLDGLTSVYKSNVDLFFYVIGSSHD 434
           T KEQKAFEK+LF+KT R  +A+I++LDG+T +Y+SNVDL+FYV+GS+ +
Sbjct: 39  TVKEQKAFEKSLFSKTSRNTSADILLLDGVTCLYRSNVDLYFYVLGSTRE 88



 Score = 34.3 bits (75), Expect = 0.081
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +2

Query: 203 TMYIIKGMCILDNEGNRILAKF 268
           ++Y IKG+ ILD +GNR+LAK+
Sbjct: 10  SLYSIKGIVILDQDGNRVLAKY 31


>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
            protein 5 protein.
          Length = 1198

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 460  LNALYESVSMLLRRNVERRILFDNLDAVMLVFDEICDR 573
            L  + + +S L ++ ++ +I+  N+ ++ LV DE+C R
Sbjct: 951  LERISKEISELTKKTLKAKIIPSNISSIQLVCDELCRR 988


>U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical
           protein ZC404.1 protein.
          Length = 184

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +1

Query: 505 VERRILFDNLDAVMLVFDEICDRGVILDADPTSIVARAALRTEDVPLGEQTVAQ 666
           VERR +    D   L+  E   +GVI+  +P   V R  +RTEDV    +TVA+
Sbjct: 103 VERREVVTARDLARLMPPE---QGVIVVCNPERSVCRIKIRTEDVRKEVETVAK 153


>U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical
           protein ZK1248.13 protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = +1

Query: 403 YSFMSSVVHMTNELILQSVLNAL---YESVSMLLRRNVERRILFDNLDAVMLVFDEICDR 573
           Y F ++   + N   L+ V NA+   ++ +S L+ R   RR++ +N+D  M + DEI  R
Sbjct: 491 YVFRTARDQIVNATSLKQVENAITDGHKKLSDLVVRIGIRRLVHENMDMFMTMTDEIRLR 550

Query: 574 GV--ILDAD 594
            V   LD D
Sbjct: 551 SVSNTLDLD 559


>Z81045-4|CAB54202.2|  402|Caenorhabditis elegans Hypothetical
           protein C36F7.4b protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 508 ERRILFDNLDAVMLVFDEICDRGVILDADPTSIVARAALRTEDV 639
           E+  LF  L  V+LVF + C RG        S+ +  AL  +DV
Sbjct: 59  EKMYLFALLCGVLLVFKQACSRGAPPTIQQPSMSSAVALLGQDV 102


>Z81139-6|CAH60791.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.8 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 397 WIYSFMSSVVHMTNELILQSVLNALYESVSMLL 495
           ++YSF+  V+ M  E I+ SVL   YES + LL
Sbjct: 135 YMYSFVFMVMAMVAERIIASVLIENYESNTQLL 167


>Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.1 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 297 EQKAFEKNLFNKTHRANAEIIMLDGLTSVYK 389
           E   F K L+  T  A+AEI +++GL++VY+
Sbjct: 238 ELSTFWKALYKYTPLADAEIPLVEGLSNVYE 268


>AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4b protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 572 LSHISSKTSIT---ASRLSKSIRLSTFLRRSILTDS*SALSTDCRINSF 435
           LS I + T I    ASR+S SIR STF R +I       +  DC  +S+
Sbjct: 356 LSKILNSTEIVSSFASRVSNSIRRSTFRRNNIDRVRKKQVVLDCEGSSY 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,442,915
Number of Sequences: 27780
Number of extensions: 360705
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)