Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G08
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 100 1e-22
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 97 1e-21
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 79 4e-16
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 65 7e-12
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 32 0.046
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 2.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.0
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 5.3
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 25 9.2
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 25 9.2
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 100 bits (240), Expect = 1e-22
Identities = 57/100 (57%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Frame = +2
Query: 230 IANDQVXNRTTPSYVAFT*HLSCLIV*CSQWFQRSPLGVAMNPNNTIFDAN-VYRTQFED 406
IANDQ NRTTPSYVAFT LI + VAMNP+NTIFDA + +F+D
Sbjct: 27 IANDQ-GNRTTPSYVAFT-DTERLIG------DAAKNQVAMNPHNTIFDAKRLIGRKFDD 78
Query: 407 ATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 526
VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+S
Sbjct: 79 PEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEIS 118
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 159 AVGIDLGTTYSCVGVFQHGKVD 224
++GIDLGTTYSCVG F + +V+
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVE 25
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 97.5 bits (232), Expect = 1e-21
Identities = 56/100 (56%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Frame = +2
Query: 230 IANDQVXNRTTPSYVAFT*HLSCLIV*CSQWFQRSPLGVAMNPNNTIFDAN-VYRTQFED 406
IANDQ NRTTPSYVAFT LI + VAMNP+NTIFDA + +F D
Sbjct: 27 IANDQ-GNRTTPSYVAFT-DTERLIG------DAAKNQVAMNPHNTIFDAKRLIGRRFND 78
Query: 407 ATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 526
VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+S
Sbjct: 79 PEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEIS 118
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 159 AVGIDLGTTYSCVGVFQHGKVD 224
++GIDLGTTYSCVG F + +V+
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVE 25
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 79.0 bits (186), Expect = 4e-16
Identities = 48/112 (42%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = +2
Query: 200 CVPAWES*RS--IANDQVXNRTTPSYVAFT*HLSCLIV*CSQWFQRSPLGVAMNPNNTIF 373
CV WE+ I NDQ RTTPS+VAFT L+ + AMNP NT+F
Sbjct: 19 CVAVWETANVEIIPNDQGA-RTTPSFVAFT-ETERLVG------DAAKNQAAMNPRNTVF 70
Query: 374 DAN-VYRTQFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 526
DA + ++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S
Sbjct: 71 DAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEIS 122
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 159 AVGIDLGTTYSCVGVFQHGKVD 224
A+GIDLGTTYSCV V++ V+
Sbjct: 8 AIGIDLGTTYSCVAVWETANVE 29
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 64.9 bits (151), Expect = 7e-12
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Frame = +2
Query: 230 IANDQVXNRTTPSYVAFT*HLSCLIV*CSQWFQRSPLGVAMNPNNTIFDAN-VYRTQFED 406
IANDQ NR TPSYVAFT L+ ++ ++P NP NTIFD + +F++
Sbjct: 60 IANDQ-GNRITPSYVAFT-EDERLVGEAAK--NQAP----SNPENTIFDIKRLIGRKFDE 111
Query: 407 ATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 526
T+ D+K +PF +V+D +P ++V G+ K F PEE+S
Sbjct: 112 KTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEIS 151
Score = 37.5 bits (83), Expect = 0.001
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +3
Query: 162 VGIDLGTTYSCVGVFQHGKVD 224
+GIDLGTTYSCV V ++G+V+
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVE 58
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 32.3 bits (70), Expect = 0.046
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 194 CGCVPAWES*RSIANDQVXNRTTPSYVAFT*HLSCLIV*CSQWFQRSPLGVAMNPNNTIF 373
C + ++ + IAN + RTTPS VAFT L+ + +NP NT F
Sbjct: 63 CLAIMEGQTPKVIANAE-GTRTTPSVVAFTKDGERLV------GVSAKRQAVINPENTFF 115
Query: 374 -DANVYRTQFEDATVQADMKHWPFEVV 451
+ +F++ VQ D+K P+++V
Sbjct: 116 ATKRLIGRRFKEPEVQRDIKEVPYKIV 142
Score = 31.5 bits (68), Expect = 0.080
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 150 KAPAVGIDLGTTYSCVGVFQ 209
K P +GIDLGTT SC+ + +
Sbjct: 49 KGPVIGIDLGTTTSCLAIME 68
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 492 PLYATLIFGLPPS--LTTSKGQCFMSACTVASSNC 394
P Y TL+ LPPS LT S G +S + SNC
Sbjct: 285 PSYTTLVSQLPPSPCLTVSSGP--LSTASSIPSNC 317
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 354 TPITPSLMPTFIGRNLKMPPYKPT*NTGLS 443
TP+TP++ PT PP T +TG S
Sbjct: 299 TPVTPTVPPTSTSSTSTPPPPASTSSTGTS 328
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 354 TPITPSLMPTFIGRNLKMPPYKPT*NTGLS 443
TP+TP++ PT PP T +TG S
Sbjct: 353 TPVTPTVPPTSTSSTSTPPPPASTSSTGTS 382
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 196 WVCSSMGKLTIHRQ*PGGQQNYALVRCVHLTLELSYRVMQP 318
+V +S L H P + NY+ RC H LE R MQP
Sbjct: 239 FVLASSDYLVSHE--PKDENNYSHTRCTHYFLE-PIRWMQP 276
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 475 DLWFTSITDNLERPVFHVGLYGGIFKL 395
D T T N+ +P+F L GG+++L
Sbjct: 209 DFMHTLDTRNIGKPLFSANLGGGVWRL 235
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.2
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 523 DLLREEGLVLTLVCHL---DLWFTSITDNLERPVFHVGLYGGIFKLRPINVGIKDGVIG 356
D+L LV+ LV + D F S DN+ +P+ GL R N +DGV G
Sbjct: 503 DILDASVLVMPLVSFISPTDPRFLSTMDNIMKPLEKDGLMSNGLIFRYNNFVYEDGVGG 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,754
Number of Sequences: 5004
Number of extensions: 47399
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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