Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G08
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               28   0.068
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 0.068
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 91  SSYELFND*LSIRYKRNKMAKHQQLVSIWA 180
           + Y+L N+  +I   R K++K QQ++ IWA
Sbjct: 12  TDYDLENE-FNINRPRRKLSKKQQMLGIWA 40


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 142 KMAKHQQLVSIWAQPTLVWVCSS 210
           K AKH+    +W    LVW  S+
Sbjct: 293 KYAKHKNNRRVWLTILLVWAISA 315


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 521 PPQGRRSCPHPCMP 480
           PP+ + +CP  C P
Sbjct: 340 PPRRKNNCPLHCKP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,895
Number of Sequences: 438
Number of extensions: 3475
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)