Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G07
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       30   0.97 
03_02_0517 + 9054816-9055655                                           29   2.2  
04_03_0649 - 18402976-18403220,18403305-18404499                       29   3.0  
11_06_0583 + 25213680-25213827,25213920-25214335                       28   5.2  
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965...    27   6.8  
02_05_1001 + 33423562-33424098                                         27   6.8  
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032...    27   9.0  
01_05_0197 + 19143582-19143618,19143814-19144523                       27   9.0  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 450 RTAFTNSALLLAEPYGFDGIDLS 518
           R AF NS++ LA   GFDG+DL+
Sbjct: 139 RRAFINSSIELARANGFDGLDLA 161


>03_02_0517 + 9054816-9055655
          Length = 279

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 174 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 308
           +++ H  C+  W  L  S P+C   LPA+     +    + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 441 PQARTAFTNSALLLAEPYGFDGIDLS 518
           P +R AF  +A+ +A   GFDG+D++
Sbjct: 141 PASRAAFIGAAVKVARENGFDGLDVA 166


>11_06_0583 + 25213680-25213827,25213920-25214335
          Length = 187

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 470 RISKSGTSLRRFQIKDCTSVDLQCRHHLPLSRTRAI 363
           +ISK+   LR  QIKD     LQ  H   L R R +
Sbjct: 142 KISKNTKILRHVQIKDGPEAQLQLSHVASLERLRKL 177


>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
            34897176-34897352,34897426-34897492,34898043-34898101,
            34898188-34898241,34898455-34898604,34898709-34898918,
            34898980-34899039,34899399-34899527,34899616-34899720,
            34899935-34900024,34900630-34900695,34901047-34901115,
            34901348-34901467,34901572-34901634,34901681-34901817,
            34902070-34902160,34902298-34902463,34902700-34904172,
            34905666-34905940,34906322-34906819,34906996-34907145,
            34907840-34907911,34908006-34908266,34908478-34908558,
            34908745-34908996,34909323-34909382,34909602-34909853,
            34910385-34910549,34910589-34910849,34911267-34912307,
            34913398-34913457,34914055-34914165,34914448-34914534,
            34915227-34915300,34915397-34915490,34915644-34915689,
            34916397-34916521
          Length = 2501

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 299  LDIDRAHANYRAITNLKRQFPQLRVFL 379
            + +D   ANYRA+  L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399


>02_05_1001 + 33423562-33424098
          Length = 178

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 318 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 214
           CA   S     E + + S   W PAD+ + WV  ERA
Sbjct: 80  CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116


>12_02_0918 -
           24299620-24299748,24299890-24300037,24303105-24303280,
           24305870-24305917,24306005-24306116,24306209-24306468
          Length = 290

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 311 RAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 418
           RAH +   +    R+    RV   VGG DD ED ++
Sbjct: 109 RAHPSLHVLVGWARRMIGFRVSTPVGGCDDEEDGRR 144


>01_05_0197 + 19143582-19143618,19143814-19144523
          Length = 248

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +2

Query: 140 VLCYYDSKSYIRES-------QARMLPTDLEPALSFCTHLLYKSAGIQADTYKM 280
           +  +YD KS IR+        + ++   D+E +  F  HL+ +S G+  D +K+
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKI 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,762,413
Number of Sequences: 37544
Number of extensions: 259973
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)