Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G07
(519 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 43 2e-04
Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical p... 32 0.21
Z70035-8|CAA93868.2| 446|Caenorhabditis elegans Hypothetical pr... 31 0.37
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z70035-7|CAA93867.1| 369|Caenorhabditis elegans Hypothetical pr... 30 0.86
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 30 1.1
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 30 1.1
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 29 2.0
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 29 2.0
Z70035-6|CAA93866.1| 444|Caenorhabditis elegans Hypothetical pr... 28 4.6
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 8.0
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 8.0
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 8.0
AL110490-9|CAB54453.2| 607|Caenorhabditis elegans Hypothetical ... 27 8.0
AF039650-1|AAC14022.3| 607|Caenorhabditis elegans acetylcholine... 27 8.0
AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 27 8.0
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 146 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRA-HA 322
CY+ + + R+ +A+ +P D P L CTH+L+ + AD +L D A
Sbjct: 57 CYFTNWAQYRQGRAKFVPEDYTPGL--CTHILFAFGWMNADYTVRAYDPADLPNDWAGEG 114
Query: 323 NYRAITNLKRQFPQLRVFLTVGG 391
YR + LK QL+ L+ GG
Sbjct: 115 MYRRVNKLKVTDTQLKTLLSFGG 137
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 438 SPQARTAFTNSALLLAEPYGFDGIDL 515
S +R F +SA+ +GFDGID+
Sbjct: 151 SSASRKVFIDSAITFVRTWGFDGIDI 176
>Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical
protein R09D1.14 protein.
Length = 150
Score = 32.3 bits (70), Expect = 0.21
Identities = 23/103 (22%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +2
Query: 104 TNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMV 283
+ +PA+P +++ YY + +Q ++ +D +S TH ++ I +D +
Sbjct: 33 STYPATPGCNKRIIGYYFA------TQTSVITSD---QVSNLTHAVFAFVNITSDGQLQI 83
Query: 284 SLNENLDIDRAHANYRAITNL-KRQFPQLRVFLTVGGDDDTED 409
D D A + + + K+Q PQ++V +++GG+D++ +
Sbjct: 84 ------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNSNN 120
>Z70035-8|CAA93868.2| 446|Caenorhabditis elegans Hypothetical
protein R09D1.8 protein.
Length = 446
Score = 31.5 bits (68), Expect = 0.37
Identities = 22/103 (21%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +2
Query: 104 TNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMV 283
+ +PA+P +++ YY + +Q ++ D +S TH ++ + +D + +
Sbjct: 75 STYPATPGCNKRIIGYYFA------TQTSVITRD---QVSKLTHAVFAFVNMTSDGHLQI 125
Query: 284 SLNENLDIDRAHANYRAITNL-KRQFPQLRVFLTVGGDDDTED 409
D D A + + + K+Q PQ++V +++GG+D++ +
Sbjct: 126 ------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNSNN 162
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 432 LESPQARTAFTNSALLLAEPYGFDGIDL 515
L SP + F NS + + Y DG+DL
Sbjct: 167 LSSPDRKKLFINSTVSFLQTYDIDGVDL 194
>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
protein C25A8.4 protein.
Length = 1067
Score = 31.1 bits (67), Expect = 0.49
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +2
Query: 182 QARMLPTDLEPALSFCTHLLYKSAGIQADT----YKMVSLNENLDIDRAHANYRAITNLK 349
+ R+ P L+ ++ CTHL+Y S I DT Y + + DID N R L+
Sbjct: 37 KTRLSPNLLQN-ITTCTHLVYGSIPIDRDTGYPQYSVSDVESGYDID----NIRTFMRLR 91
Query: 350 RQFPQLRVFLTVGGDDDTED 409
+ P ++ + V ED
Sbjct: 92 KYHPNAKLLMGVVRTKPFED 111
>Z70035-7|CAA93867.1| 369|Caenorhabditis elegans Hypothetical
protein R09D1.7 protein.
Length = 369
Score = 30.3 bits (65), Expect = 0.86
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 417 STIFY--LESPQARTAFTNSALLLAEPYGFDGIDL 515
S FY L SP R F N+ + YG DGIDL
Sbjct: 83 SNNFYKVLNSPNRRKVFLNATTSFLQIYGIDGIDL 117
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +2
Query: 224 FCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDT 403
F +L K GI A YK+VSLN L++ + A N R+ +F + DDD
Sbjct: 511 FSRYLHTKQRGIPAKVYKVVSLNSCLEVCAGNPTC-AGANYNRRLGDCTLFDAI--DDDA 567
Query: 404 E 406
E
Sbjct: 568 E 568
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +2
Query: 224 FCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDT 403
F +L K GI A YK+VSLN L++ + A N R+ +F + DDD
Sbjct: 507 FSRYLHTKQRGIPAKVYKVVSLNSCLEVCAGNPTC-AGANYNRRLGDCTLFDAI--DDDA 563
Query: 404 E 406
E
Sbjct: 564 E 564
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 269 CQLGCRQICTADGCRTKEQAPSP 201
CQ C+Q C C T+ AP+P
Sbjct: 103 CQSSCQQTCQTSSCYTQIAAPAP 125
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 269 CQLGCRQICTADGCRTKEQAPSP 201
CQ C+Q C C T+ AP+P
Sbjct: 104 CQSSCQQTCQTSSCYTQIAAPAP 126
>Z70035-6|CAA93866.1| 444|Caenorhabditis elegans Hypothetical
protein R09D1.6 protein.
Length = 444
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 432 LESPQARTAFTNSALLLAEPYGFDGIDL 515
L SP + F NS + + Y DG+DL
Sbjct: 165 LSSPDRKKLFINSTVSFLQTYDIDGVDL 192
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = +2
Query: 296 NLDIDRAHANYRAITNL----KRQFPQLRVFLTVGGDDDTED 409
+L ID A R TNL K+Q PQ++V +++GG+D++ +
Sbjct: 120 HLQIDGDLAKNR-FTNLIEIAKQQTPQVKVMISIGGNDNSNN 160
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 290 NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNL 427
N D+D AH + R++ + + Q+ R L + D KY L
Sbjct: 1780 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQL 1825
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 290 NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNL 427
N D+D AH + R++ + + Q+ R L + D KY L
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQL 1898
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 290 NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNL 427
N D+D AH + R++ + + Q+ R L + D KY L
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQL 1898
>AL110490-9|CAB54453.2| 607|Caenorhabditis elegans Hypothetical
protein Y48B6A.8 protein.
Length = 607
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 291 LSETILYVSAWMPADLYS 238
+SE LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133
>AF039650-1|AAC14022.3| 607|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 607
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 291 LSETILYVSAWMPADLYS 238
+SE LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133
>AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical
protein W08E12.2 protein.
Length = 120
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 245 CTADGCRTKEQAPSP*AAYVLEIL*YSSCCHSSRGLCFGY 126
C+ + C AP +Y YSSCC+S+ C GY
Sbjct: 65 CSCNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFSCCGY 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,199
Number of Sequences: 27780
Number of extensions: 214037
Number of successful extensions: 602
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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