Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G06
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    26   3.9  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    25   5.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.0  

>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 456 LVSWSLKGLLSLPAVTRGKAFSQRLK 379
           L SWSL  LL+LPA T  +   Q LK
Sbjct: 309 LSSWSLVFLLTLPATTINRENFQPLK 334


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 471 SGWNILVSWSLKGLLSLPAVTRGKAFSQR 385
           S WN  +S+SL+G + +    RGK   Q+
Sbjct: 79  SFWNDSISYSLRGCILMELAFRGKLRMQK 107


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 83   NISVSFQECSASNPASCRIPQPGD 12
            NI +S+QE       + R P PGD
Sbjct: 2154 NIPISYQEIKVDLDFALRSPNPGD 2177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,387
Number of Sequences: 5004
Number of extensions: 50286
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)