Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G06
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0274 + 13656032-13656254,13657126-13657239,13657610-13657644     28   4.0  
05_05_0328 + 24130887-24130919,24132207-24132279,24133542-241336...    27   6.9  
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601...    27   9.1  

>06_02_0274 + 13656032-13656254,13657126-13657239,13657610-13657644
          Length = 123

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +3

Query: 21  LRNSARGRIRSGTLLKGN*YITPNGLNVKKFSALHEFQNLHALAKDKINEFSRGHFHGHF 200
           L+  A   +  G    G  ++ P  LN+       E     A A D++ + + GH H  F
Sbjct: 36  LQGGANHELPGGDFQGGANHVLPFDLNLYASDHQGEIHLDDADAMDQVLQVNGGHNHNAF 95

Query: 201 NFDLD 215
            FDL+
Sbjct: 96  PFDLN 100


>05_05_0328 +
           24130887-24130919,24132207-24132279,24133542-24133635,
           24133924-24134037,24134121-24134169,24134364-24134873
          Length = 290

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 65  ERKLIYYTERFEREEIFGPA*ISKPSRL 148
           ER++I   E+FE    F P   SKPS+L
Sbjct: 148 EREIISAYEKFEENHEFPPGQFSKPSQL 175


>02_05_0968 +
           33156585-33156941,33158510-33159902,33160035-33160118,
           33160216-33160265
          Length = 627

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 404 PRVTAGKLKSPLRDHDTRIFQPEGSRNKDVRHLPERTSTG 523
           PRV +G   S  ++H +   +   ++ K  R LP R+S+G
Sbjct: 207 PRVFSGHRSSTAKEHGSSSAKGGTTKPKPPRSLPRRSSSG 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,506,706
Number of Sequences: 37544
Number of extensions: 340221
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)