Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G06
(523 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY052005-1|AAK93429.1| 689|Drosophila melanogaster LD46952p pro... 175 2e-44
AE014297-1937|AAN13624.1| 689|Drosophila melanogaster CG6904-PC... 175 2e-44
AE014297-1936|AAN13623.1| 689|Drosophila melanogaster CG6904-PB... 175 2e-44
AE014297-1935|AAF55132.2| 709|Drosophila melanogaster CG6904-PA... 175 2e-44
AY128477-1|AAM75070.1| 939|Drosophila melanogaster RE39339p pro... 29 5.1
AE014298-628|AAF45943.3| 939|Drosophila melanogaster CG3626-PA ... 29 5.1
AY075582-1|AAL68387.1| 841|Drosophila melanogaster SD08161p pro... 28 6.7
AJ312282-1|CAC41644.1| 841|Drosophila melanogaster nuclear RNA ... 28 6.7
AE014296-2758|AAF49447.3| 841|Drosophila melanogaster CG4118-PB... 28 6.7
AE014296-2757|AAF49448.3| 841|Drosophila melanogaster CG4118-PA... 28 6.7
>AY052005-1|AAK93429.1| 689|Drosophila melanogaster LD46952p
protein.
Length = 689
Score = 175 bits (427), Expect = 2e-44
Identities = 91/147 (61%), Positives = 106/147 (72%)
Frame = +3
Query: 81 ITPNGLNVKKFSALHEFQNLHALAKDKINEFSRGHFHGHFNFDLDKTLYFFIAGRYEYGN 260
ITPNGLNVKKFSA+HEFQNLHA+AK+KINEF RGHF+GH +FDLDKTLYFFIAGRYE+GN
Sbjct: 288 ITPNGLNVKKFSAIHEFQNLHAVAKEKINEFVRGHFYGHIDFDLDKTLYFFIAGRYEFGN 347
Query: 261 KGADIFIEALARLNHYLTSSDSDMTVVAFLIFPGEKLNKLSTVGKKPSRGSPQVNLKAP* 440
KGADIFIEALARLN L D TVVAFLIFP K N + + Q+
Sbjct: 348 KGADIFIEALARLNAMLKHEKPDTTVVAFLIFP-TKTNNFNVDSLRGHAVIKQLR----- 401
Query: 441 GTTIQGYSSQKGRGTRMYDICLRGHLP 521
TI + Q+ G RM+D CL+G++P
Sbjct: 402 -DTIN--NVQQAVGKRMFDTCLQGNIP 425
>AE014297-1937|AAN13624.1| 689|Drosophila melanogaster CG6904-PC,
isoform C protein.
Length = 689
Score = 175 bits (427), Expect = 2e-44
Identities = 91/147 (61%), Positives = 106/147 (72%)
Frame = +3
Query: 81 ITPNGLNVKKFSALHEFQNLHALAKDKINEFSRGHFHGHFNFDLDKTLYFFIAGRYEYGN 260
ITPNGLNVKKFSA+HEFQNLHA+AK+KINEF RGHF+GH +FDLDKTLYFFIAGRYE+GN
Sbjct: 288 ITPNGLNVKKFSAIHEFQNLHAVAKEKINEFVRGHFYGHIDFDLDKTLYFFIAGRYEFGN 347
Query: 261 KGADIFIEALARLNHYLTSSDSDMTVVAFLIFPGEKLNKLSTVGKKPSRGSPQVNLKAP* 440
KGADIFIEALARLN L D TVVAFLIFP K N + + Q+
Sbjct: 348 KGADIFIEALARLNAMLKHEKPDTTVVAFLIFP-TKTNNFNVDSLRGHAVIKQLR----- 401
Query: 441 GTTIQGYSSQKGRGTRMYDICLRGHLP 521
TI + Q+ G RM+D CL+G++P
Sbjct: 402 -DTIN--NVQQAVGKRMFDTCLQGNIP 425
>AE014297-1936|AAN13623.1| 689|Drosophila melanogaster CG6904-PB,
isoform B protein.
Length = 689
Score = 175 bits (427), Expect = 2e-44
Identities = 91/147 (61%), Positives = 106/147 (72%)
Frame = +3
Query: 81 ITPNGLNVKKFSALHEFQNLHALAKDKINEFSRGHFHGHFNFDLDKTLYFFIAGRYEYGN 260
ITPNGLNVKKFSA+HEFQNLHA+AK+KINEF RGHF+GH +FDLDKTLYFFIAGRYE+GN
Sbjct: 288 ITPNGLNVKKFSAIHEFQNLHAVAKEKINEFVRGHFYGHIDFDLDKTLYFFIAGRYEFGN 347
Query: 261 KGADIFIEALARLNHYLTSSDSDMTVVAFLIFPGEKLNKLSTVGKKPSRGSPQVNLKAP* 440
KGADIFIEALARLN L D TVVAFLIFP K N + + Q+
Sbjct: 348 KGADIFIEALARLNAMLKHEKPDTTVVAFLIFP-TKTNNFNVDSLRGHAVIKQLR----- 401
Query: 441 GTTIQGYSSQKGRGTRMYDICLRGHLP 521
TI + Q+ G RM+D CL+G++P
Sbjct: 402 -DTIN--NVQQAVGKRMFDTCLQGNIP 425
>AE014297-1935|AAF55132.2| 709|Drosophila melanogaster CG6904-PA,
isoform A protein.
Length = 709
Score = 175 bits (427), Expect = 2e-44
Identities = 91/147 (61%), Positives = 106/147 (72%)
Frame = +3
Query: 81 ITPNGLNVKKFSALHEFQNLHALAKDKINEFSRGHFHGHFNFDLDKTLYFFIAGRYEYGN 260
ITPNGLNVKKFSA+HEFQNLHA+AK+KINEF RGHF+GH +FDLDKTLYFFIAGRYE+GN
Sbjct: 308 ITPNGLNVKKFSAIHEFQNLHAVAKEKINEFVRGHFYGHIDFDLDKTLYFFIAGRYEFGN 367
Query: 261 KGADIFIEALARLNHYLTSSDSDMTVVAFLIFPGEKLNKLSTVGKKPSRGSPQVNLKAP* 440
KGADIFIEALARLN L D TVVAFLIFP K N + + Q+
Sbjct: 368 KGADIFIEALARLNAMLKHEKPDTTVVAFLIFP-TKTNNFNVDSLRGHAVIKQLR----- 421
Query: 441 GTTIQGYSSQKGRGTRMYDICLRGHLP 521
TI + Q+ G RM+D CL+G++P
Sbjct: 422 -DTIN--NVQQAVGKRMFDTCLQGNIP 445
>AY128477-1|AAM75070.1| 939|Drosophila melanogaster RE39339p
protein.
Length = 939
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 39 GRIRSGTLLKGN*YITPNGLNVKKFSALHEFQNLHALAKDKINEFSRGHFHGHFNFD 209
GR+ + + KG+ Y+ + L++ +F LH N +D+ E HF ++ F+
Sbjct: 423 GRVLTDLITKGSTYLDLHILDISRFLGLH---NNRKFLRDRCKEAPGKHFEINYPFE 476
>AE014298-628|AAF45943.3| 939|Drosophila melanogaster CG3626-PA
protein.
Length = 939
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 39 GRIRSGTLLKGN*YITPNGLNVKKFSALHEFQNLHALAKDKINEFSRGHFHGHFNFD 209
GR+ + + KG+ Y+ + L++ +F LH N +D+ E HF ++ F+
Sbjct: 423 GRVLTDLITKGSTYLDLHILDISRFLGLH---NNRKFLRDRCKEAPGKHFEINYPFE 476
>AY075582-1|AAL68387.1| 841|Drosophila melanogaster SD08161p
protein.
Length = 841
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 99 NVKKFSALHEFQNLHA-LAKDKINEFSRGHFHGHFNFDLDKTLYFFIAGRYEYGNKGADI 275
N+ K Q+ HA + D +EF++ F F LD TL F Y+Y N +
Sbjct: 312 NMWKLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRLDPTLSNFYPCYYKYINT-EHV 370
Query: 276 FI--EALARLNHYLTSSDSDMTV 338
F+ ++ H + + + +MT+
Sbjct: 371 FLVRNCFDQIAHLVNNCNLEMTI 393
>AJ312282-1|CAC41644.1| 841|Drosophila melanogaster nuclear RNA
export factor 2 (NXF2) protein.
Length = 841
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 99 NVKKFSALHEFQNLHA-LAKDKINEFSRGHFHGHFNFDLDKTLYFFIAGRYEYGNKGADI 275
N+ K Q+ HA + D +EF++ F F LD TL F Y+Y N +
Sbjct: 312 NMWKLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRLDPTLSNFYPCYYKYINT-EHV 370
Query: 276 FI--EALARLNHYLTSSDSDMTV 338
F+ ++ H + + + +MT+
Sbjct: 371 FLVRNCFDQIAHLVNNCNLEMTI 393
>AE014296-2758|AAF49447.3| 841|Drosophila melanogaster CG4118-PB,
isoform B protein.
Length = 841
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 99 NVKKFSALHEFQNLHA-LAKDKINEFSRGHFHGHFNFDLDKTLYFFIAGRYEYGNKGADI 275
N+ K Q+ HA + D +EF++ F F LD TL F Y+Y N +
Sbjct: 312 NMWKLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRLDPTLSNFYPCYYKYINT-EHV 370
Query: 276 FI--EALARLNHYLTSSDSDMTV 338
F+ ++ H + + + +MT+
Sbjct: 371 FLVRNCFDQIAHLVNNCNLEMTI 393
>AE014296-2757|AAF49448.3| 841|Drosophila melanogaster CG4118-PA,
isoform A protein.
Length = 841
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 99 NVKKFSALHEFQNLHA-LAKDKINEFSRGHFHGHFNFDLDKTLYFFIAGRYEYGNKGADI 275
N+ K Q+ HA + D +EF++ F F LD TL F Y+Y N +
Sbjct: 312 NMWKLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRLDPTLSNFYPCYYKYINT-EHV 370
Query: 276 FI--EALARLNHYLTSSDSDMTV 338
F+ ++ H + + + +MT+
Sbjct: 371 FLVRNCFDQIAHLVNNCNLEMTI 393
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,522,435
Number of Sequences: 53049
Number of extensions: 559055
Number of successful extensions: 1101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -