Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G06
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-25|CAB60373.1|  672|Caenorhabditis elegans Hypothetical...   163   7e-41
U41532-1|AAF99904.3|  370|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   6.2  
U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa ...    27   8.1  

>AL110485-25|CAB60373.1|  672|Caenorhabditis elegans Hypothetical
           protein Y46G5A.31 protein.
          Length = 672

 Score =  163 bits (396), Expect = 7e-41
 Identities = 85/151 (56%), Positives = 105/151 (69%), Gaps = 4/151 (2%)
 Frame = +3

Query: 81  ITPNGLNVKKFSALHEFQNLHALAKDKINEFSRGHFHGHFNFDLDKTLYFFIAGRYEYGN 260
           +TPNGLNV KF+ALHEFQNLHA  K+KIN+F RGHFHGH +FDLDKTLYFF AGRYE+ N
Sbjct: 295 LTPNGLNVVKFAALHEFQNLHAQNKEKINQFIRGHFHGHLDFDLDKTLYFFTAGRYEFSN 354

Query: 261 KGADIFIEALARLNHYL-TSSD---SDMTVVAFLIFPGEKLNKLSTVGKKPSRGSPQVNL 428
           KG D+FIE+LARLNHYL T+SD     +TVVAFLI+P    N  +    K    + Q+  
Sbjct: 355 KGGDMFIESLARLNHYLKTTSDPRHMGVTVVAFLIYPA-PANSFNVESLKGQAVTKQLK- 412

Query: 429 KAP*GTTIQGYSSQKGRGTRMYDICLRGHLP 521
                  +     + G+  R++DICL+GHLP
Sbjct: 413 -----EAVDRIKEKVGQ--RIFDICLQGHLP 436


>U41532-1|AAF99904.3|  370|Caenorhabditis elegans Hypothetical
           protein F11D5.5 protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 5   LVDPRAEEFGTRQDSKRNTPERKLIYYTERFERE 106
           L+  RA  FG +++S  NTP  + + +  +F+ E
Sbjct: 336 LIKNRARTFGAKRNSILNTPRSRAVTFNHKFDSE 369


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 303  HYLTSSDSDMTVVAFLIFPGEKLNKLSTVGKKPSR 407
            HYL           F  FP  KL K+    +KPSR
Sbjct: 2199 HYLPGLAKQKNKYIFTYFPNPKLEKVKLSQRKPSR 2233


>U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa
           synthetase familyprotein 17 protein.
          Length = 718

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +3

Query: 330 MTVVAFLIF--PGEKLNKLSTVGKKPSRGSPQV---NLKAP*GTTIQGYSSQKGRGTRMY 494
           +T + F IF  P EKL K   V  +P  G P     N+ A  G     +      GT+ +
Sbjct: 37  VTFIPFKIFADPAEKLEKSERVKAEPDNGDPTTPWKNVSAKDGLMNSSFEGIHDLGTQ-W 95

Query: 495 DICLR 509
           + C+R
Sbjct: 96  EECVR 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,757
Number of Sequences: 27780
Number of extensions: 288269
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)