Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G06
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 47  SKRNTPERKLIYYTE 91
           +K N PE++L Y+TE
Sbjct: 210 TKHNVPEQRLNYFTE 224


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 47  SKRNTPERKLIYYTE 91
           +K N PE++L Y+TE
Sbjct: 210 TKHNVPEQRLNYFTE 224


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 516 DVLSGKCRTSLFRDPSGWNILVSWSLKGLLSLPAVTRGKAFSQRLKV 376
           D L     TSLFR P G  I  +   K  L +     GK+ +  ++V
Sbjct: 109 DKLESSDDTSLFRGPKGIQINATELQKIKLEIHRDLPGKSTTTTVEV 155


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 324 NLTTSNNG*AWPVPR*IYRRPCSR 253
           N+T  + G AWP    I +RP  R
Sbjct: 910 NVTPRSPGRAWPGDSDIRQRPIPR 933


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,543
Number of Sequences: 438
Number of extensions: 3562
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)