Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_G04
(546 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 343 5e-95
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 341 2e-94
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 341 2e-94
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 341 2e-94
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 341 2e-94
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 341 2e-94
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 341 2e-94
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 341 2e-94
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 327 4e-90
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 302 1e-82
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 248 3e-66
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 208 2e-54
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 188 2e-48
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 186 7e-48
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 186 7e-48
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 182 1e-46
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 167 5e-42
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 136 1e-32
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 101 4e-22
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 51 5e-07
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 51 5e-07
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 31 0.54
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 31 0.54
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 30 0.95
Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr prote... 30 1.2
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 28 3.8
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 28 5.0
AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical ... 28 5.0
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 5.0
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 27 6.7
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 6.7
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 27 8.8
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 27 8.8
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 343 bits (843), Expect = 5e-95
Identities = 158/161 (98%), Positives = 161/161 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 422
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 423 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVT 161
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 341 bits (839), Expect = 2e-94
Identities = 156/161 (96%), Positives = 161/161 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 422
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 423 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVT 161
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 341 bits (838), Expect = 2e-94
Identities = 156/161 (96%), Positives = 161/161 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 422
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 423 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVT 161
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 341 bits (838), Expect = 2e-94
Identities = 156/161 (96%), Positives = 161/161 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 422
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 423 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVT 161
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 341 bits (838), Expect = 2e-94
Identities = 156/161 (96%), Positives = 161/161 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 422
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 423 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVT 161
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 341 bits (838), Expect = 2e-94
Identities = 156/161 (96%), Positives = 161/161 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 422
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 423 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVT 161
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 341 bits (838), Expect = 2e-94
Identities = 156/161 (96%), Positives = 161/161 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 422
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 423 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVT 161
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 341 bits (838), Expect = 2e-94
Identities = 156/161 (96%), Positives = 161/161 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 422
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 423 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
TQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVT 161
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 327 bits (803), Expect = 4e-90
Identities = 148/159 (93%), Positives = 158/159 (99%)
Frame = +3
Query: 69 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 248
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 249 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 428
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQ 121
Query: 429 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
IMFETFN+PAMYV IQAVLSLYASGRTTGIVLD+GDGV+
Sbjct: 122 IMFETFNTPAMYVNIQAVLSLYASGRTTGIVLDTGDGVT 160
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 302 bits (741), Expect = 1e-82
Identities = 138/143 (96%), Positives = 143/143 (100%)
Frame = +3
Query: 117 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 296
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 297 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 476
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 124
Query: 477 AVLSLYASGRTTGIVLDSGDGVS 545
AVLSLYASGRTTG+VLDSGDGV+
Sbjct: 125 AVLSLYASGRTTGVVLDSGDGVT 147
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 248 bits (606), Expect = 3e-66
Identities = 113/117 (96%), Positives = 117/117 (100%)
Frame = +3
Query: 195 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 374
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 375 LLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
LLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVT 117
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 208 bits (509), Expect = 2e-54
Identities = 94/163 (57%), Positives = 126/163 (77%), Gaps = 4/163 (2%)
Frame = +3
Query: 69 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 239
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 240 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 416
+S RG+ +++YP+EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE
Sbjct: 62 ESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRE 121
Query: 417 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
+ +I FETFN PA+Y+ +QAVLSLYA+GRTTG+VLDSGDGV+
Sbjct: 122 RSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVVLDSGDGVT 164
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 188 bits (458), Expect = 2e-48
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKI 320
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 7e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKI 320
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 7e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDMEKI 320
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 182 bits (444), Expect = 1e-46
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 242
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 243 SKRGILTLKYPIEHGIITNWDDM 311
SKRGILTLKYPIEHGI+TNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 167 bits (406), Expect = 5e-42
Identities = 81/156 (51%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Frame = +3
Query: 87 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGIL 260
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 261 TLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMF 437
+ YP+++GI+ NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMF 128
Query: 438 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
E + ++YVA+QAVL+LYA G TG+V+DSGDGV+
Sbjct: 129 EQYGFNSIYVAVQAVLTLYAQGLLTGVVVDSGDGVT 164
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 136 bits (329), Expect = 1e-32
Identities = 77/182 (42%), Positives = 103/182 (56%), Gaps = 21/182 (11%)
Frame = +3
Query: 63 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 206
M + A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 207 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 383
D ++GDEA S T+KYPI HGI+ +WD ME+ W + LR PE+H LLT
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLT 120
Query: 384 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDG 539
E PLN NRE +IMFE+FN P +Y+A+QAVL+L AS + TG+V+DSGDG
Sbjct: 121 EPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDG 180
Query: 540 VS 545
V+
Sbjct: 181 VT 182
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 101 bits (241), Expect = 4e-22
Identities = 63/171 (36%), Positives = 92/171 (53%), Gaps = 17/171 (9%)
Frame = +3
Query: 72 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA--QS 245
D+V+ LV D GS + GFAG++ P+ PS + Q+ GD + Q+
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 246 KR------GILTLKYP---------IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 380
KR G + P ++ G+I +W+ EKI H++ N L P EHPVL
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLF 128
Query: 381 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 533
+E+ N +A REK+T+IMFE F PA Y++ VLS +A GRT G+++DSG
Sbjct: 129 SESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGLMVDSG 179
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 51.2 bits (117), Expect = 5e-07
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Frame = +3
Query: 78 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 257
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 258 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 437
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 438 ETFNSPAMYVAIQAVLSLYASGRTT----GIVLDSG 533
+ F ++ + L S + +V+DSG
Sbjct: 116 DYFGFTEVHKTSASTLVAKHSNKINNEKCAVVVDSG 151
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 51.2 bits (117), Expect = 5e-07
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Frame = +3
Query: 78 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 257
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 258 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 437
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 438 ETFNSPAMYVAIQAVLSLYASGRTT----GIVLDSG 533
+ F ++ + L S + +V+DSG
Sbjct: 116 DYFGFTEVHKTSASTLVAKHSNKINNEKCAVVVDSG 151
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 41.5 bits (93), Expect = 4e-04
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 2/155 (1%)
Frame = +3
Query: 87 LVVDNGSGMCKAGFAGDDA--PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 260
L+++ GS +AG + P++ FP+I R + VG + R I
Sbjct: 181 LILELGSCSIRAGVLTTEPSLPQSFFPAIAVRTDDGKIFVGEDAYRPEIRHNGDFVRPIS 240
Query: 261 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 440
+E I D+ K EL+V P ++ VLL+ P ++ QI E
Sbjct: 241 ATDPSVERYSIDK--DVLKAVIGKVTKELKVEPWKYKVLLSIPQNIPTVLIGELLQICLE 298
Query: 441 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 545
+ + Q L LYA TTG+V+D G+ V+
Sbjct: 299 DIKFQSAGITRQPSLILYAYDVTTGVVVDIGERVN 333
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 541 TPSPESSTIPVVRPEAYRESTAWMATYIAGEL 446
TP P SST+PVV P + T +Y+A L
Sbjct: 865 TPQPLSSTMPVVAPSTSTQPTPTTGSYLANTL 896
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 208 PMPTMTPWWRGRPTMDGKTARGASSPAKPALHMPEPL 98
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 30.3 bits (65), Expect = 0.95
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 170 GSPSPPGCHGRHGTEGLLRR**GPEQER-YPHPEVP 274
G P P G G HGTEG + GPE + YP P P
Sbjct: 510 GPPGPMGLRGPHGTEGETGK-QGPEGSKGYPGPMGP 544
>Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical
protein C41C4.4 protein.
Length = 967
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 191 TLVARATHDGREDGARRVVTGETGFAHAGA 102
T+V R T DGRE +RVV+ FAH A
Sbjct: 531 TVVYRGTFDGREVAVKRVVSEFVKFAHREA 560
>AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr protein
kinase protein.
Length = 967
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 191 TLVARATHDGREDGARRVVTGETGFAHAGA 102
T+V R T DGRE +RVV+ FAH A
Sbjct: 531 TVVYRGTFDGREVAVKRVVSEFVKFAHREA 560
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 170 GSPSPPGCHGRHGTEGL 220
G P PPGC G G GL
Sbjct: 112 GPPGPPGCRGEPGPSGL 128
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 469 PSRPCSPYTPPVVRP 513
P++PC P TPP RP
Sbjct: 122 PAQPCDPITPPPCRP 136
>AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical
protein Y37H2C.1 protein.
Length = 718
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/75 (22%), Positives = 28/75 (37%)
Frame = +3
Query: 45 TKTHAKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 224
+K H D L++ +C GF G A + + G HQ + + +
Sbjct: 495 SKRHGMFVVDSSLRLIIKIVFSICSIGFTGYFAYKYFYERPSGLQSHQWICTPLSSQQKV 554
Query: 225 VGDEAQSKRGILTLK 269
+ D+ KR L K
Sbjct: 555 LEDDKNVKRRPLNSK 569
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 117 KAGFAGDDAPRAVFPSIVGRPRHQG 191
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 469 PSRPCSPYTPPVVRP 513
P++PC P TPP RP
Sbjct: 143 PAQPCHPITPPPCRP 157
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 170 GSPSPPGCHGRHGTEGLLRR**GPEQERYPHPEVPHRTRYH 292
G P PG HGRHG+ R G R+ P P R +H
Sbjct: 358 GPPHCPGRHGRHGSRSHSPRGHG-HGGRHGPPHCPGRHGHH 397
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 GSPSPPGCHGRHGTEGL---LRR**GPEQERYPHPEVPH 277
G PS PG G HGT G L +Q++ H +PH
Sbjct: 366 GQPSTPGTPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPH 404
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 170 GSPSPPGCHGRHGTEGL---LRR**GPEQERYPHPEVPH 277
G PS PG G HGT G L +Q++ H +PH
Sbjct: 366 GQPSTPGTPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPH 404
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 170 GSPSPPGCHGRHGTEGLLRR**GPEQERYPHP 265
GS PG HGR G G+ + P YP P
Sbjct: 193 GSKGAPGTHGRQGMPGVRYQLGEPGPAGYPGP 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,113
Number of Sequences: 27780
Number of extensions: 271921
Number of successful extensions: 1674
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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