Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G03
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   2.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   3.8  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   5.0  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   5.0  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   5.0  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   6.7  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   8.8  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   8.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    24   8.8  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    24   8.8  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   8.8  

>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 327 GKYTKRHWFGVINRRRRAV 383
           G+Y KR W+  +NR  R++
Sbjct: 278 GQYPKRDWYSFVNRDNRSL 296


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 419 PSEPSAVVDVSEYCTPPAINNAKPMTLSVLPSKQSPMRKH 300
           PS PSAV  +     PP ++ A     S  PS  +P   H
Sbjct: 188 PSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGH 227


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 428 LTLPSEPSAVVDVSEYCTPPAINNAKPMTLSVLPSKQS 315
           ++L     A+  V     PP++N   P T SVLP   S
Sbjct: 70  MSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESFS 107


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 81  FKIYLRPVNICSVLVVRTSFSLCSAWSKVSQN 176
           FKI  R  N   +LV  +S SL  +  K+S+N
Sbjct: 113 FKICKRLYNRIQILVFMSSSSLIQSQQKISEN 144


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -3

Query: 122 KHTAYIH--RPQIDLKCMHC 69
           +H AY H   P   LKC+HC
Sbjct: 42  EHCAYCHIKNPNSILKCLHC 61


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 51  VTLYSQAVHTFKIYLRPVNICSVLVVRT---SFSLCSAWS 161
           VTL  + V  FK+Y  P++    L +++    FS   AWS
Sbjct: 640 VTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWS 679


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 143 RKRSSHNKH--TAYIHRPQIDLKCMHC 69
           R+RSSHN+H  ++  H P +   C +C
Sbjct: 150 RRRSSHNQHEDSSPPHEPSVTF-CQNC 175


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 419 PSEPSAVVDVSEYCTPPAINNAKPMTLSVLPSKQS 315
           PS  S V  +SEY +  +    + + L V+P+KQ+
Sbjct: 23  PSRLSTVASISEYQSDYSKTVFEEIELEVIPNKQN 57


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 166 LVKMPTNAVYQPTTVTYEQQPNDQRWNC--PISYFSRRVT--SSLNRT 297
           ++ M +++V+   T  YE+  N   W C    SY S  V+  S L RT
Sbjct: 775 ILPMVSDSVWSTLTRWYEESENSSFWKCDKDASYSSLDVSNDSLLGRT 822


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 212 LTNNSLMTNDGTVPSATSH 268
           L NN+L+ N G  PS  +H
Sbjct: 211 LENNALLNNSGNSPSLINH 229


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 374 PPAINNAKPMTL-SVLPSKQSPMRKH 300
           PP  NNA P TL S +PS +     H
Sbjct: 240 PPNSNNANPSTLFSSIPSSRHTTSNH 265


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 364 LITPNQ*RLVYFPVNRVQCAN-ILYDSNYLS 275
           LI P+   L YF +N+VQ  + +L+D + LS
Sbjct: 193 LIIPHHHELYYFYINKVQGRDGLLFDFDKLS 223


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -1

Query: 220 VRKLLLLADTQHSSAF*LTLDQALHKENEVLTTSTLHIFTGLK*ILNVCTA 68
           +R LL + ++  S  F L   Q   +  + L TS    F GL  IL  C A
Sbjct: 158 LRVLLGMMESAASPGFILLTAQWYKRSEQQLRTSVWVAFNGLGQILGSCMA 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,101
Number of Sequences: 5004
Number of extensions: 32839
Number of successful extensions: 102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)