Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G03
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0560 - 4413174-4414469                                           29   1.6  
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668...    27   8.7  
06_03_0838 + 25271924-25272310                                         27   8.7  
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818           27   8.7  

>11_01_0560 - 4413174-4414469
          Length = 431

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 389 SEYCTPPAINNAKPMTLSVLPSKQSPMRKHTVR 291
           S   +PP++++  P    V PS+  P R+ T+R
Sbjct: 259 SSLSSPPSLSSVFPRIARVFPSRTKPRRRRTLR 291


>09_04_0687 +
           19465594-19465780,19465994-19466022,19466731-19466803,
           19467237-19467311,19467583-19467644,19467727-19467795,
           19468447-19468475,19468553-19468760,19468867-19469100,
           19469591-19470598
          Length = 657

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 413 EPSAVVDVSEYCTPPAINNAKPMTLSVLPSKQSPMRKHT 297
           +PS  V VS   +PP +++ K   L  LP   +   KHT
Sbjct: 508 QPSIHVRVSPNTSPPLLSSPKIKELHELPRPPANASKHT 546


>06_03_0838 + 25271924-25272310
          Length = 128

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 434 VYLTLPSEPSAVVDVSEYCTPPAINNAKPMTLSVLPSKQSP 312
           V + L  EP  VV ++    P  + +AKP++  VLP    P
Sbjct: 82  VLVPLDREPKVVVIMAGDTAPSFLASAKPLSSFVLPPPPPP 122


>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
          Length = 743

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 425 TLPSEPSAVVDVSEYCTPPAIN 360
           T P EPSA   ++E   PPA+N
Sbjct: 96  TQPEEPSAEESLAEVKVPPAVN 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,023
Number of Sequences: 37544
Number of extensions: 209293
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)