Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G03
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical ...    30   0.83 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    28   3.4  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical
           protein Y26D4A.3 protein.
          Length = 138

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 202 TTVTYEQQPNDQRWNCPISYFSRRVTSSLNRTVCLRIGLCLLGSTLSVIGLALLI 366
           + VT+  Q   QR    IS  +RR+ +  NR++      C+  S  SVIGL + I
Sbjct: 52  SAVTFSNQECQQRNQVVISRRARRINNCRNRSIS-----CIEWSCFSVIGLVIFI 101


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +1

Query: 148 AVLGLKLVKMPTNAVYQPTTVTYEQQPNDQRWNCPISYFSRRVTSSLNRTVCLRIGLCLL 327
           A+  L L    T  +     VT  Q      W+CP    S + TS++   + +   LCL+
Sbjct: 26  ALASLLLFGWQTGVLNHCRVVTMAQSNLQCEWDCPCVGASSKRTSAIIEGLFVIQVLCLI 85

Query: 328 GSTLSVIGLALLIAG 372
            +   V   A +I G
Sbjct: 86  AAFFLVFASAAMIYG 100


>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 86  DLFEACEYMQCACCENFVFFVQCL 157
           D  +A +Y+  AC ++F  FVQCL
Sbjct: 23  DQKQAMDYIAAACQQDFPVFVQCL 46


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 178 PTNAVYQPTTVTYEQQPNDQRWNCPISY 261
           P NAV QP+T+ Y +   +   NC   Y
Sbjct: 81  PNNAVSQPSTIGYVECSQNNPTNCITGY 108


>U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical
           protein B0554.4 protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 160 LKLVKMPTNAVYQPTTVTYEQQPNDQRWNCPIS-YFSRRVTSSLNRTVCLRI 312
           +K  ++PT     PT +TY    ND+  +   S + S  VT SL  T  +++
Sbjct: 66  VKCEQIPTLRACSPTALTYGVGDNDKVIDVDYSDFMSTPVTGSLETTSTMKV 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,802,348
Number of Sequences: 27780
Number of extensions: 192978
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)