Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G03
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.85 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.85 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   4.5  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   4.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 422 LPSEPSAVVDVSEYCTPPAINNAKPMTLSVLPSKQSPMRKHTVRFKLLVTRREK 261
           +PS P     +S + TP +   A   TL  LPS  +   K  +  KL   + +K
Sbjct: 648 MPSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKKVKK 701


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = +1

Query: 244 NCPISYFSRRVTSSLNRTVCLRIGL---CLLGSTLSVIGLALLIAGGVQYSDTSTTADGS 414
           NC I  + RR         CL +G+   C++      +      A   +    STT +GS
Sbjct: 228 NCEIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKEKDKPNSTTMNGS 287

Query: 415 DGS 423
            GS
Sbjct: 288 PGS 290


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 133  LRFLCAVLGLKLVKMPTNA-VYQPTTVTYEQQPNDQR 240
            L+ +    GLK       A V  PTT+T  Q P +Q+
Sbjct: 1256 LKVIPTPAGLKTTGAAVYARVIAPTTITSSQSPGNQQ 1292


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 340 LVYFPVNRVQCANILYDSNYLSHDVRSS*WDSSI 239
           L YFP++R  C   +    Y   D+R   W++ +
Sbjct: 142 LQYFPMDRQLCHIEIESFGYTMRDIRYK-WNAGL 174


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 340 LVYFPVNRVQCANILYDSNYLSHDVR 263
           L YFP++R  C   +    Y   D+R
Sbjct: 142 LQYFPMDRQLCHIEIESFGYTMRDIR 167


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 340 LVYFPVNRVQCANILYDSNYLSHDVR 263
           L YFP++R  C   +    Y   D+R
Sbjct: 81  LQYFPMDRQLCHIEIESFGYTMRDIR 106


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 244 NCPISYFSRRVTSSLNRTVCLRIGL 318
           NC I  + RR         CL +G+
Sbjct: 25  NCEIDMYMRRKCQECRLKKCLTVGM 49


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 239 RWSLGCCS*VTVVG*YTAFVGILT 168
           +W LG C     V   +++V +LT
Sbjct: 101 QWGLGICKLRAYVSETSSYVSVLT 124


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +1

Query: 145 CAVLGLKLVKMPTNAVYQPTTVTYEQQPNDQR 240
           CA       + P  +V   TT   +QQ   Q+
Sbjct: 771 CATSNYSTTRWPATSVITTTTGARQQQQQQQQ 802


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,037
Number of Sequences: 438
Number of extensions: 2323
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)