Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G02
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0049 - 6083364-6084111,6084140-6084246                           28   4.5  
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654...    27   7.9  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    27   7.9  

>05_02_0049 - 6083364-6084111,6084140-6084246
          Length = 284

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -1

Query: 474 AAVPHDGAEVDA---RCCDHSAVQA-PCSSVARQFCSLATSHFASP*FPSGL 331
           A VP D A   A   RC   S+ ++ P S  AR  CS A +  ASP  PS L
Sbjct: 44  AGVPADAASAAASAGRCWSSSSWRSSPPSPAARSTCSTARTAPASPSRPSKL 95


>04_01_0500 -
           6540769-6541482,6541819-6541877,6541965-6542064,
           6542113-6542322,6542507-6542765,6544022-6544215
          Length = 511

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 233 ARAGERAQKEDQRGRKGEQG 292
           +R G R ++ED++G +GE+G
Sbjct: 8   SREGRRVEEEDEKGPQGERG 27


>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
            6501915-6502156,6502229-6502457,6503020-6503184,
            6503279-6503605,6504150-6504191,6504333-6504400,
            6504748-6504934,6506249-6506311,6506748-6506790,
            6506919-6507019,6507110-6507184,6507359-6507445,
            6507593-6507682,6507906-6507992,6508585-6508783,
            6509113-6509177,6509502-6509606,6509726-6509871,
            6510100-6510224,6510335-6510437,6510482-6510596,
            6510734-6510869,6511298-6511387,6511484-6511578,
            6511698-6511763,6511868-6511936,6512034-6512147,
            6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 438  RCCDHSAVQAPCSSVARQFCSLATSHFAS 352
            RCC H  V+    ++AR+F  +A  ++ S
Sbjct: 986  RCCSHPRVETDLKTLARRFWKVAAPYWWS 1014


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,909
Number of Sequences: 37544
Number of extensions: 186915
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)