Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_G02
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family ...    29   1.3  
AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    27   7.0  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    27   7.0  

>U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family
           protein 1 protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 432 CDHSAVQAPCSSVARQFCSLATSHFASP*FP 340
           C  S   A  SS    FC+ +TSH  SP FP
Sbjct: 10  CTISDASAHTSSSRTSFCTPSTSHIVSPSFP 40


>AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical
           protein C34B2.6 protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 297 PEIKPTKGSIAPVRKGIKETQNVKSQENKTGEQQKSKGLV 416
           P + P+  S+AP     +E +   +  + TGE+QK KG++
Sbjct: 221 PPLAPSVASVAPEISATEEKEEKTTPPSATGEKQK-KGII 259


>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
           protein W08D2.5 protein.
          Length = 1256

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 191 KSISVIHSHTV--GILHCDPLDDLITQK 114
           K+I+  HS T   G+LH DPLD ++ QK
Sbjct: 525 KAIATCHSLTRINGVLHGDPLDLILFQK 552


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 323 YCSSPEGNQGDAKCEVAREQNWRATEEQGAC 415
           YC  PE    DA+C+V R  +    +E   C
Sbjct: 227 YCRPPEDGGEDAECDVCRISDCDVADEMVFC 257


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 323 YCSSPEGNQGDAKCEVAREQNWRATEEQGAC 415
           YC  PE    DA+C+V R  +    +E   C
Sbjct: 268 YCRPPEDGGEDAECDVCRISDCDVADEMVFC 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,256,160
Number of Sequences: 27780
Number of extensions: 160784
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)