Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F24
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    25   3.8  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    25   3.8  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   6.6  
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    25   6.6  
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    25   6.6  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   6.6  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    24   8.7  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    24   8.7  

>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 79  SLGGPASGADTLSVPD 126
           SLG P+ G DTLS PD
Sbjct: 250 SLGDPSVGLDTLSWPD 265


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 220 LFVDPMINFNHYHDNSACLVGKQL-RTLVI 306
           L++D  ++F HY  ++A L  KQL  TLVI
Sbjct: 11  LWLDGCMDFFHYGHSNAILQAKQLGETLVI 40


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 120 P*LSELTLTKPVYVQDVCRYLFAGC 194
           P L  L L++  Y+ D C  L AGC
Sbjct: 346 PNLISLNLSRIFYLDDECVRLLAGC 370


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 207 PRWYYIRRTNIGKHL 163
           P WYY+R   I +H+
Sbjct: 50  PDWYYVRAAAIARHI 64


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 207 PRWYYIRRTNIGKHL 163
           P WYY+R   I +H+
Sbjct: 50  PDWYYVRAAAIARHI 64


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 FKMFADICSPDVVPT 204
           F MFAD C+ D++P+
Sbjct: 30  FLMFADRCTKDIIPS 44


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -1

Query: 374 TQSLHMFIPFKIF*QL----IQLYYSIITRVRNCFPTKHALLS 258
           T S   F+PFKI  QL    I ++ S++ + R   P    +L+
Sbjct: 85  TASFGRFVPFKILNQLPYGGINIHPSLLPKYRGAGPVYSTILN 127


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 120 P*LSELTLTKPVYVQDVCRYL 182
           P +S      PVYVQD+C+ L
Sbjct: 497 PTVSRSKTHSPVYVQDLCKML 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,756
Number of Sequences: 5004
Number of extensions: 29051
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)