Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F24
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0659 - 26522217-26522591                                         29   2.1  
02_02_0587 + 11875678-11877234,11877606-11877608,11877755-118778...    27   4.9  
04_01_0528 - 6917414-6919849                                           27   6.5  

>03_05_0659 - 26522217-26522591
          Length = 124

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +2

Query: 5   GAPRGQRQQAWPSRSPSRQVAGTRGA*VGP--LQGLTRCRSLTQRTN--LDEASLCSRCL 172
           GAPR +RQQ      P  +VAG  G  +       L RC  +  RT+  LD+ +  S  L
Sbjct: 22  GAPRARRQQGGGCGRPLDRVAGWVGGGIAAAFFASLERCSCVNVRTHDELDDETRDSEAL 81

Query: 173 PI 178
            I
Sbjct: 82  LI 83


>02_02_0587 +
           11875678-11877234,11877606-11877608,11877755-11877823,
           11878605-11878719,11879139-11879248
          Length = 617

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 163 KMFADICSPDVVPTW*FVVLFVDPMINFNHYHDNSACLVGKQLR 294
           +MF ++ S  ++P+   + LF++P+  F   H  +A L+ K+ R
Sbjct: 375 QMFDEMLSRGILPSTGMITLFIEPLCTFGPPH--AALLIYKRSR 416


>04_01_0528 - 6917414-6919849
          Length = 811

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 400 YCS-QITKITRNLCICSYRLKYFDNLFNY 317
           YC+   TK T N C+C  R K+FDN   Y
Sbjct: 313 YCTFDGTKNTTN-CLCPQRYKFFDNERTY 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,309,960
Number of Sequences: 37544
Number of extensions: 187306
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)