Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F24
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    30   0.82 
Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 427 FCFFLCSTIYCSQITKITRNLCICSYRLKYFDNLFNYIIL 308
           +C FL      + +   T  LC+C + L  FD +F+ IIL
Sbjct: 75  YCTFLAIVTSNAFLNLSTLILCVCLFYLYIFDQVFHLIIL 114


>Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical
           protein C09G5.5 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 93  GPT*APRVPATCREGEREGQACCLCPRGAP 4
           GP   P  P        + Q C  CP+GAP
Sbjct: 110 GPAGKPGQPGVAGPAHHQQQECIKCPQGAP 139


>U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical
           protein T14E8.2 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 421 FFLCSTIYCSQITKITRN---LCICSYRLKYFDNLFNYII 311
           F LC     SQ TKITR    LC+C  RLKY   L   +I
Sbjct: 12  FVLCE----SQQTKITRGYDVLCLCCRRLKYVIVLIRKLI 47


>U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical
           protein T27A10.6 protein.
          Length = 870

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 203 VGTTSGEQISANIL--NINWLRQG*FAESGTDNVSAPEAGPP 84
           +G+   EQ +A I   ++N L Q    E   + VSAP+AGPP
Sbjct: 352 IGSAQSEQKAAQIFQQSLNKLLQN-ANEKPIEAVSAPKAGPP 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,972,779
Number of Sequences: 27780
Number of extensions: 175108
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)