Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F23
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 210 1e-55
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 210 1e-55
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 29 0.36
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 28 0.83
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 1.9
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 26 2.5
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.3
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 5.8
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 7.7
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 210 bits (512), Expect = 1e-55
Identities = 98/131 (74%), Positives = 113/131 (86%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 208 EEEVEQIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 387
EE+E+IVTI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 388 RGMRHYWGLRV 420
RG+RH LRV
Sbjct: 121 RGLRHALDLRV 131
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 210 bits (512), Expect = 1e-55
Identities = 98/131 (74%), Positives = 113/131 (86%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 207
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 208 EEEVEQIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 387
EE+E+IVTI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 388 RGMRHYWGLRV 420
RG+RH LRV
Sbjct: 121 RGLRHALDLRV 131
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 29.1 bits (62), Expect = 0.36
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 355 DLERLKKIRAHRGMRHYWGLRV 420
D+ RL IR +RGMRH GL V
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPV 97
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 0.83
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 364 FPNLHEAWSLNWKKSTGCICHQQYPFV 284
F NL+ + L W++ C C QYPF+
Sbjct: 368 FINLYHDFEL-WEQKINCFCFCQYPFL 393
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 242 QTPGNTKYQTGFSTDKRIL--LMANTAS*LLPI*TPSFVKIW 361
Q+PG+ + GF+ D+R L ++N+ + P P V+ W
Sbjct: 459 QSPGSLETTNGFTLDERNLAFTLSNSVGHMAPSKDPQMVREW 500
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 91 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEQI 228
GK+KV+ I + R+YSN+ +KA+ L ++ + V QI
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQLLRQIFDDQNIAVNQI 55
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 469 HQQFYLFCLWS*CVDHGHADP-SSDAYPYEHGSSSAFPNLHEAWSLNWKK 323
+Q +FC+W+ C++ +P S Y +E G H S+ KK
Sbjct: 40 NQLIRVFCVWA-CIELHSINPWYSGMYTFETGRLLVLKQRHRVLSMELKK 88
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 5.8
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 181 LDKRAGECTEEEVEQIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 360
L+ A TEE I++ N QY IP+ F+ +K+ + + +S +SK D
Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162
Query: 361 ERLKKIR 381
++ R
Sbjct: 163 SNRRESR 169
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 7.7
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 227 ICSTSSSVHSPARLSRSISAFFNTMLEYRRPTPLIAVIANITLRLPSMF 81
IC SSS S A + +S+F +L+ TP N + S F
Sbjct: 274 ICCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSDMNWAYIIASFF 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,496
Number of Sequences: 5004
Number of extensions: 34151
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -