Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F23
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 206 9e-54
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 195 2e-50
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 193 5e-50
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 79 2e-15
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 31 0.47
03_01_0404 + 3138624-3140096 31 0.47
04_04_1697 - 35454337-35454576,35454657-35454888,35455045-354552... 31 0.62
05_06_0118 + 25735966-25737601,25737698-25738488 28 4.4
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 206 bits (502), Expect = 9e-54
Identities = 86/125 (68%), Positives = 114/125 (91%)
Frame = +1
Query: 46 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEQ 225
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 226 IVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 405
++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 406 WGLRV 420
WGLRV
Sbjct: 123 WGLRV 127
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 195 bits (475), Expect = 2e-50
Identities = 90/147 (61%), Positives = 118/147 (80%), Gaps = 16/147 (10%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 192
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 193 -----------AGECTEEEVEQIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 339
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 340 SKLREDLERLKKIRAHRGMRHYWGLRV 420
KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRV 147
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 193 bits (471), Expect = 5e-50
Identities = 90/149 (60%), Positives = 118/149 (79%), Gaps = 18/149 (12%)
Frame = +1
Query: 28 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 192
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 193 -------------AGECTEEEVEQIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 333
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 334 LDSKLREDLERLKKIRAHRGMRHYWGLRV 420
LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRV 149
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 78.6 bits (185), Expect = 2e-15
Identities = 35/51 (68%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Frame = +1
Query: 271 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 420
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 57
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 349 REDLERLKKIRAHRGMRHYWGLRV 420
R +ERLK+IR +RG+RH GL V
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPV 131
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 301 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 399
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>04_04_1697 -
35454337-35454576,35454657-35454888,35455045-35455252,
35455380-35455629,35456232-35456354
Length = 350
Score = 30.7 bits (66), Expect = 0.62
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = -3
Query: 323 VNWLYLPSTISFCL-LRNQSGIL-YCLGFDMIVTICSTSSSVHSPARLSRSISAFFNTML 150
V W Y +I+ L + SG+L +CL F + I ST++ + A + A + L
Sbjct: 222 VTWFYTHDSIASALVIIIGSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWL 281
Query: 149 EYRRP-TPLIAVIANITL 99
+R P +P+ A+ ITL
Sbjct: 282 IFRNPISPMNAIGCAITL 299
>05_06_0118 + 25735966-25737601,25737698-25738488
Length = 808
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = -3
Query: 236 IVTICSTSSSVHSPARLS---RSISAFFNTMLEYRRPTPLIAVIANITLRLPSMFVFIIR 66
I+ CS + S R S +S + T E TPL I LRLP+ + +
Sbjct: 395 IMVTCSAYQNEKSDIRFSSFTKSFTPVHRTRKEIGFSTPLSKATKEILLRLPAESILKLE 454
Query: 65 RIC*NLSGITRD 30
+C G+ ++
Sbjct: 455 LVCKQWRGLIKN 466
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,247,921
Number of Sequences: 37544
Number of extensions: 210161
Number of successful extensions: 635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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