Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F22
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 52 8e-08
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 45 9e-06
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 6e-05
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 42 6e-05
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 38 8e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 36 0.003
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 34 0.012
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 34 0.012
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 33 0.037
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.065
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 30 0.20
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 30 0.20
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.26
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 30 0.26
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 0.46
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 0.80
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 0.80
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 27 1.9
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 27 1.9
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 3.2
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 4.3
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 26 4.3
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 4.3
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 26 4.3
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.3
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 25 7.5
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 25 7.5
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 25 7.5
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 25 7.5
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.5
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.9
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 51.6 bits (118), Expect = 8e-08
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +2
Query: 128 LKTLNSHITCKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTC 271
LK L+S + C IC YF A +T C HTFC C+ +L E+ CP C
Sbjct: 20 LKGLDSSLRCLICHEYF-RAPLITSCSHTFCSFCIRDYLREHPMCPAC 66
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 44.8 bits (101), Expect = 9e-06
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 131 KTLNSHITCKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTC 271
+ ++ + C+IC G D V+ C HTFC CL++ L ++ CPTC
Sbjct: 161 ENVSRELECQICFGMLYDPV-VSPCGHTFCGPCLMQALTQSPQCPTC 206
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 149 ITCKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQYISFD 319
+ C IC + T C HT+C CL+ L+E+ +CPTC ++ Y+ ++
Sbjct: 83 LECPICTEA-LQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPSPAYLVYE 138
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 41.9 bits (94), Expect = 6e-05
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +2
Query: 80 YSSSK*FKMTMERRIKLKTLNSHITCKICRGYFIDATTVTECLHTFCKSCLVKHLEENNT 259
+ S + + + I LK SH C ICR I +T C H +C CL L+ +++
Sbjct: 1068 FESRRRYLTNLYEHIVLKA-ESHQICIICRD-IIKQGFITTCGHLYCSFCLEAWLKHSSS 1125
Query: 260 CPTCNIVIHQSH 295
CP C +++++
Sbjct: 1126 CPMCKTKLNKNN 1137
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 38.3 bits (85), Expect = 8e-04
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 146 HITCKICRGYFIDATTVTECLHTFCKSCLVKHLE-----ENNTCPTCNI 277
+I CKIC DA + C HTFC+ C+ +++ EN CP+C I
Sbjct: 708 NIVCKICDEVAQDAIE-SRCHHTFCRLCVTEYINAAGDGENVNCPSCFI 755
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 155 CKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTC 271
C +C FI TEC H FC SC+ + + CP C
Sbjct: 256 CSLCME-FIHCPAATECGHIFCWSCINGWTSKKSECPLC 293
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 34.3 bits (75), Expect = 0.012
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 125 KLKTLNSHITCKICRGYFIDATTVTECLHTFCKSCLVKHLE-ENNTCPTC 271
+LKT + C +C ++ C H FC C+ K +E CP C
Sbjct: 617 ELKTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPIC 666
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 34.3 bits (75), Expect = 0.012
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 149 ITCKICRGYFID----ATTVTECLHTFCKSCLVKHLEENNTCPTC 271
+TC IC + T C H F K+CL K LE + TCP C
Sbjct: 105 LTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLC 149
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 32.7 bits (71), Expect = 0.037
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 149 ITCKICRGYFIDATTVTECLHTFCKSCLVKHLE-ENNTCPTC 271
+ C +C + + C H FC +C+ E + +TCP C
Sbjct: 637 LKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 31.9 bits (69), Expect = 0.065
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 197 TECLHTFCKSCLVKHLE--ENNTCPTCNIVIHQSHPLQ 304
T+C HT+C +C++ L+ N +CP C I + P Q
Sbjct: 211 TDCGHTYCYACIMSRLKLVNNVSCPICKHRIRFALPDQ 248
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 30.3 bits (65), Expect = 0.20
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +2
Query: 188 TTVTECLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQYISFDRTMQDIVYKLVPDLQD 367
TT+ L F K+ ++ ++ T P IV S+P +Y ++ MQ+++ K + + D
Sbjct: 148 TTIGNNLRIFWKNGKIRCIKLTCT-PDAEIVNFTSNPNRYRFYETNMQELIRKTICEKSD 206
Query: 368 NEIKR 382
I++
Sbjct: 207 KAIEK 211
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 30.3 bits (65), Expect = 0.20
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 80 YSSSK*FKMTMERRIKLKTLNSHITCKICRGYFIDATTVTECLHTFCKSCL-VKHLEENN 256
Y S K +T K++ N + C +C+ +A C FC+ C+ L+ +
Sbjct: 258 YQSRK-AALTANDVYKMQPPNISLACTLCKKLARNACRTPCCDKLFCEECIQTALLDSDF 316
Query: 257 TCPTCN 274
CP C+
Sbjct: 317 ECPNCH 322
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 29.9 bits (64), Expect = 0.26
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 194 VTECLHTFCKSCLVKHLEENNTCPTC 271
+T C H + + CL++ +E + CP C
Sbjct: 644 LTPCHHLYHRQCLLQWMETRSICPVC 669
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.26
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 155 CKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTC 271
C IC+ + + T C H FC+ C + + TC C
Sbjct: 254 CLICKKDY-RSPIATTCGHHFCEQCAITRYRKTPTCIQC 291
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.1 bits (62), Expect = 0.46
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 128 LKTLNSHIT-CKICRGYFIDATTVTECLHTFCKSCLVKHLE 247
LK+ + IT C IC I + C H C CL +H++
Sbjct: 867 LKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLSEHIQ 907
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 28.3 bits (60), Expect = 0.80
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 101 KMTMERRIKLKTLNSHITCKICRGYFI--DATTVTECLHTFCKSCLVKHLEENNTCPTC 271
KM +++ K + ++ C IC F D C H F ++C+ L N TC C
Sbjct: 379 KMKVQKPPK-ELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAIC 436
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 28.3 bits (60), Expect = 0.80
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Frame = +2
Query: 155 CKICRGYFIDA---TTVTECLHTFCKSCLVKHLEENNTCPTC 271
C IC Y ++ C H + C +++ N CPTC
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 203 CLHTFCKSCLVKHLEENNTCPTC--NIVIHQSHP 298
C H CL LE TCP C +++ +QS P
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRRSVIGNQSSP 361
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +2
Query: 197 TECLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQYISFD 319
T C H FC C++ L C + + HP + I +
Sbjct: 219 TPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVICLE 259
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +2
Query: 203 CLHTFCKSCLVKHLEENNT--CPTC 271
C H F SCL K + +N+ CP C
Sbjct: 1579 CRHKFHASCLYKWFKSSNSSRCPLC 1603
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = +2
Query: 125 KLKTLNSHITCKICRGYFIDATTVTECLHTFCKSCL 232
+LK + + + C +C + + C H C+ CL
Sbjct: 737 RLKLIET-LQCSLCMDVVAELLIIVPCGHFLCRECL 771
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 191 TVTECLHTFCKSCLVKHLEENNTCPTCN 274
T +C + FC CL E N TCN
Sbjct: 308 TCKKCKYEFCWVCLGPWTEHGNNWYTCN 335
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 152 TCKICRGYFIDATTVTECLHTFCKSCLVKHLE 247
TC+IC EC H FC +C ++L+
Sbjct: 130 TCEICYDEGCLPFFSAECDHEFCLACYRQYLD 161
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +2
Query: 203 CLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQYI 310
C H F CL NTCP C + L+++
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLEFV 91
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 155 CKICRGYF--IDATTVTECLHTFCKSCL 232
C +C F D +T C H C+SCL
Sbjct: 174 CNVCFDEFNGTDCFQLTRCGHVSCQSCL 201
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 155 CKICRGYFIDATTVTECLHTFCKSCLVKHLE 247
C C A ++ C H +C SCL++ +E
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLLRFVE 244
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 527 ILSTHSPVHLFYDSLCYQAVR 465
+L H P+HLF S C++ ++
Sbjct: 87 VLRFHRPLHLFQTSECHELIQ 107
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -2
Query: 484 CVIRLFGFITSWFVCS*GCIFWTWQSPSTVK 392
C G W + G FW W+S ST K
Sbjct: 120 CTQEAVGSQEQWIAENLGSGFWAWKSVSTKK 150
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 7.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 479 NTDCHRKDEQVNVCLECISTS 541
N D H + +N+C +CI +
Sbjct: 332 NADIHMTSKYINICRDCIQAA 352
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 200 ECLHTFCKSCLVKHLEENNT-CPT--CNIVIHQS 292
EC H C+SC+ + CPT CN ++ ++
Sbjct: 33 ECYHKMCESCVDRIFTTGPAQCPTPGCNKILRKA 66
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +2
Query: 155 CKICRGYFIDATTVTECLHTFCKSCL-VKHLEENNTCPTC 271
C IC + C H FC CL + ++ + CP C
Sbjct: 360 CAICSNVAYKPVRLG-CSHVFCLHCLIILQKQKVDFCPLC 398
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 155 CKICRGYFIDATTVTECLHT-FCKSCLVKHLEENNTCPTC 271
C IC ++ C H F SC+ + ++++ TCP C
Sbjct: 21 CVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPIC 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,066
Number of Sequences: 5004
Number of extensions: 41493
Number of successful extensions: 132
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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